Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0880 and Shewana3_0881 overlap by 8 nucleotides Shewana3_0881 and Shewana3_0882 are separated by 5 nucleotides Shewana3_0882 and Shewana3_0883 are separated by 374 nucleotides
Shewana3_0880: Shewana3_0880 - ABC transporter related (RefSeq), at 1,026,759 to 1,027,484
_0880
Shewana3_0881: Shewana3_0881 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,027,477 to 1,028,157
_0881
Shewana3_0882: Shewana3_0882 - extracellular solute-binding protein (RefSeq), at 1,028,163 to 1,028,897
_0882
Shewana3_0883: Shewana3_0883 - hypothetical protein (RefSeq), at 1,029,272 to 1,030,096
_0883
Position (kb) 1028
1029 Strain fitness (log2 ratio) -2
-1
0
1 at 1027.431 kb on + strand at 1027.439 kb on - strand at 1027.552 kb on - strand, within Shewana3_0881 at 1027.552 kb on - strand, within Shewana3_0881 at 1027.559 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.561 kb on + strand, within Shewana3_0881 at 1027.567 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.569 kb on - strand, within Shewana3_0881 at 1027.581 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.618 kb on + strand, within Shewana3_0881 at 1027.848 kb on - strand, within Shewana3_0881 at 1027.953 kb on - strand, within Shewana3_0881 at 1028.005 kb on - strand, within Shewana3_0881 at 1028.019 kb on + strand, within Shewana3_0881 at 1028.020 kb on + strand, within Shewana3_0881 at 1028.070 kb on + strand, within Shewana3_0881 at 1028.146 kb on - strand at 1028.155 kb on - strand at 1028.495 kb on - strand, within Shewana3_0882 at 1028.512 kb on - strand, within Shewana3_0882 at 1028.554 kb on - strand, within Shewana3_0882 at 1028.744 kb on - strand, within Shewana3_0882 at 1028.864 kb on + strand at 1028.934 kb on - strand at 1029.352 kb on + strand at 1029.413 kb on - strand, within Shewana3_0883 at 1029.619 kb on + strand, within Shewana3_0883 at 1029.621 kb on - strand, within Shewana3_0883 at 1029.705 kb on + strand, within Shewana3_0883 at 1029.755 kb on + strand, within Shewana3_0883 at 1029.768 kb on + strand, within Shewana3_0883 at 1029.803 kb on + strand, within Shewana3_0883 at 1029.810 kb on + strand, within Shewana3_0883
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,027,431 + -1.0 1,027,439 - +0.1 1,027,552 - Shewana3_0881 0.11 +0.4 1,027,552 - Shewana3_0881 0.11 +0.4 1,027,559 + Shewana3_0881 0.12 -2.3 1,027,561 + Shewana3_0881 0.12 +0.3 1,027,561 + Shewana3_0881 0.12 -2.5 1,027,561 + Shewana3_0881 0.12 -2.7 1,027,561 + Shewana3_0881 0.12 -0.1 1,027,561 + Shewana3_0881 0.12 -1.5 1,027,567 - Shewana3_0881 0.13 -0.0 1,027,569 - Shewana3_0881 0.14 -0.0 1,027,569 - Shewana3_0881 0.14 -0.1 1,027,569 - Shewana3_0881 0.14 -0.3 1,027,569 - Shewana3_0881 0.14 +0.1 1,027,569 - Shewana3_0881 0.14 +0.5 1,027,581 + Shewana3_0881 0.15 -1.1 1,027,618 + Shewana3_0881 0.21 -1.5 1,027,618 + Shewana3_0881 0.21 -0.0 1,027,618 + Shewana3_0881 0.21 -1.1 1,027,848 - Shewana3_0881 0.54 +0.2 1,027,953 - Shewana3_0881 0.70 +0.6 1,028,005 - Shewana3_0881 0.78 +0.3 1,028,019 + Shewana3_0881 0.80 -0.3 1,028,020 + Shewana3_0881 0.80 +0.3 1,028,070 + Shewana3_0881 0.87 +0.5 1,028,146 - +0.4 1,028,155 - -0.4 1,028,495 - Shewana3_0882 0.45 -2.4 1,028,512 - Shewana3_0882 0.47 -0.1 1,028,554 - Shewana3_0882 0.53 -2.1 1,028,744 - Shewana3_0882 0.79 -2.1 1,028,864 + -0.0 1,028,934 - -0.3 1,029,352 + -0.2 1,029,413 - Shewana3_0883 0.17 -1.6 1,029,619 + Shewana3_0883 0.42 -0.2 1,029,621 - Shewana3_0883 0.42 -0.1 1,029,705 + Shewana3_0883 0.52 +0.4 1,029,755 + Shewana3_0883 0.59 +0.9 1,029,768 + Shewana3_0883 0.60 +0.2 1,029,803 + Shewana3_0883 0.64 +0.1 1,029,810 + Shewana3_0883 0.65 +0.4
Or see this region's nucleotide sequence