Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0873 and Shewana3_0874 are separated by 123 nucleotides Shewana3_0874 and Shewana3_0875 are separated by 253 nucleotides
Shewana3_0873: Shewana3_0873 - putative lipoprotein (RefSeq), at 1,018,421 to 1,019,428
_0873
Shewana3_0874: Shewana3_0874 - DSBA oxidoreductase (RefSeq), at 1,019,552 to 1,020,304
_0874
Shewana3_0875: Shewana3_0875 - formate dehydrogenase (RefSeq), at 1,020,558 to 1,021,202
_0875
Position (kb)
1019
1020
1021 Strain fitness (log2 ratio)
-2
-1
0
1 at 1018.702 kb on + strand, within Shewana3_0873 at 1019.004 kb on + strand, within Shewana3_0873 at 1019.012 kb on - strand, within Shewana3_0873 at 1019.396 kb on + strand at 1019.429 kb on + strand at 1019.872 kb on + strand, within Shewana3_0874 at 1020.039 kb on + strand, within Shewana3_0874 at 1020.093 kb on + strand, within Shewana3_0874 at 1020.100 kb on + strand, within Shewana3_0874 at 1020.186 kb on - strand, within Shewana3_0874 at 1020.295 kb on - strand at 1020.295 kb on - strand at 1020.310 kb on + strand at 1020.437 kb on + strand at 1020.450 kb on - strand at 1020.531 kb on + strand at 1020.532 kb on - strand at 1020.586 kb on + strand at 1020.685 kb on - strand, within Shewana3_0875 at 1020.695 kb on + strand, within Shewana3_0875 at 1020.762 kb on + strand, within Shewana3_0875 at 1021.088 kb on + strand, within Shewana3_0875 at 1021.125 kb on - strand, within Shewana3_0875 at 1021.130 kb on - strand, within Shewana3_0875 at 1021.154 kb on - strand at 1021.169 kb on + strand at 1021.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,018,702 + Shewana3_0873 0.28 -0.5 1,019,004 + Shewana3_0873 0.58 -0.1 1,019,012 - Shewana3_0873 0.59 -1.4 1,019,396 + +0.6 1,019,429 + +0.5 1,019,872 + Shewana3_0874 0.42 +0.0 1,020,039 + Shewana3_0874 0.65 -1.5 1,020,093 + Shewana3_0874 0.72 -1.3 1,020,100 + Shewana3_0874 0.73 +0.2 1,020,186 - Shewana3_0874 0.84 -2.0 1,020,295 - +0.4 1,020,295 - +0.4 1,020,310 + -1.4 1,020,437 + -0.5 1,020,450 - +0.4 1,020,531 + -2.5 1,020,532 - -0.9 1,020,586 + -0.2 1,020,685 - Shewana3_0875 0.20 -0.4 1,020,695 + Shewana3_0875 0.21 -1.3 1,020,762 + Shewana3_0875 0.32 -0.6 1,021,088 + Shewana3_0875 0.82 +0.8 1,021,125 - Shewana3_0875 0.88 -1.8 1,021,130 - Shewana3_0875 0.89 -0.8 1,021,154 - -1.1 1,021,169 + -0.2 1,021,169 + -0.2
Or see this region's nucleotide sequence