Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0833 and Shewana3_0834 are separated by 98 nucleotides Shewana3_0834 and Shewana3_0835 are separated by 130 nucleotides
Shewana3_0833: Shewana3_0833 - diguanylate cyclase with GAF sensor (RefSeq), at 965,846 to 966,814
_0833
Shewana3_0834: Shewana3_0834 - hypothetical protein (RefSeq), at 966,913 to 967,872
_0834
Shewana3_0835: Shewana3_0835 - LysR family transcriptional regulator (RefSeq), at 968,003 to 968,986
_0835
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1 at 966.018 kb on + strand, within Shewana3_0833 at 966.490 kb on + strand, within Shewana3_0833 at 966.490 kb on + strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.498 kb on - strand, within Shewana3_0833 at 966.558 kb on - strand, within Shewana3_0833 at 966.625 kb on - strand, within Shewana3_0833 at 966.810 kb on - strand at 966.816 kb on - strand at 966.862 kb on + strand at 966.932 kb on + strand at 966.983 kb on + strand at 967.064 kb on - strand, within Shewana3_0834 at 967.289 kb on + strand, within Shewana3_0834 at 967.297 kb on - strand, within Shewana3_0834 at 967.381 kb on + strand, within Shewana3_0834 at 967.389 kb on - strand, within Shewana3_0834 at 967.389 kb on - strand, within Shewana3_0834 at 967.393 kb on + strand, within Shewana3_0834 at 967.480 kb on - strand, within Shewana3_0834 at 967.634 kb on - strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.646 kb on + strand, within Shewana3_0834 at 967.654 kb on - strand, within Shewana3_0834 at 967.749 kb on + strand, within Shewana3_0834 at 967.757 kb on - strand, within Shewana3_0834 at 967.781 kb on + strand at 968.067 kb on + strand at 968.196 kb on - strand, within Shewana3_0835 at 968.237 kb on - strand, within Shewana3_0835 at 968.258 kb on + strand, within Shewana3_0835 at 968.313 kb on + strand, within Shewana3_0835 at 968.401 kb on + strand, within Shewana3_0835 at 968.409 kb on - strand, within Shewana3_0835 at 968.578 kb on - strand, within Shewana3_0835 at 968.744 kb on + strand, within Shewana3_0835 at 968.752 kb on - strand, within Shewana3_0835 at 968.867 kb on + strand, within Shewana3_0835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 966,018 + Shewana3_0833 0.18 +0.6 966,490 + Shewana3_0833 0.66 -1.2 966,490 + Shewana3_0833 0.66 +0.5 966,498 - Shewana3_0833 0.67 -0.3 966,498 - Shewana3_0833 0.67 -1.1 966,498 - Shewana3_0833 0.67 -0.9 966,498 - Shewana3_0833 0.67 -0.4 966,558 - Shewana3_0833 0.73 +0.5 966,625 - Shewana3_0833 0.80 -0.7 966,810 - -1.4 966,816 - -0.2 966,862 + +0.6 966,932 + -0.2 966,983 + +0.4 967,064 - Shewana3_0834 0.16 +0.4 967,289 + Shewana3_0834 0.39 -1.0 967,297 - Shewana3_0834 0.40 +0.8 967,381 + Shewana3_0834 0.49 -0.3 967,389 - Shewana3_0834 0.50 +0.4 967,389 - Shewana3_0834 0.50 +0.5 967,393 + Shewana3_0834 0.50 +0.3 967,480 - Shewana3_0834 0.59 +0.3 967,634 - Shewana3_0834 0.75 +0.9 967,646 + Shewana3_0834 0.76 -0.4 967,646 + Shewana3_0834 0.76 -0.0 967,646 + Shewana3_0834 0.76 -0.7 967,654 - Shewana3_0834 0.77 +0.4 967,749 + Shewana3_0834 0.87 +0.3 967,757 - Shewana3_0834 0.88 -0.4 967,781 + +0.9 968,067 + +0.2 968,196 - Shewana3_0835 0.20 -1.2 968,237 - Shewana3_0835 0.24 -2.7 968,258 + Shewana3_0835 0.26 -0.4 968,313 + Shewana3_0835 0.32 -0.4 968,401 + Shewana3_0835 0.40 -0.2 968,409 - Shewana3_0835 0.41 -0.0 968,578 - Shewana3_0835 0.58 -0.7 968,744 + Shewana3_0835 0.75 +0.2 968,752 - Shewana3_0835 0.76 +0.6 968,867 + Shewana3_0835 0.88 +0.2
Or see this region's nucleotide sequence