Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0824 and Shewana3_0825 are separated by 133 nucleotides Shewana3_0825 and Shewana3_0826 are separated by 107 nucleotides Shewana3_0826 and Shewana3_0827 are separated by 149 nucleotides Shewana3_0827 and Shewana3_0828 are separated by 12 nucleotides
Shewana3_0824: Shewana3_0824 - Ion transport 2 domain-containing protein (RefSeq), at 955,599 to 956,423
_0824
Shewana3_0825: Shewana3_0825 - hypothetical protein (RefSeq), at 956,557 to 956,886
_0825
Shewana3_0826: Shewana3_0826 - hypothetical protein (RefSeq), at 956,994 to 957,647
_0826
Shewana3_0827: Shewana3_0827 - phage shock protein A, PspA (RefSeq), at 957,797 to 958,486
_0827
Shewana3_0828: Shewana3_0828 - hypothetical protein (RefSeq), at 958,499 to 958,912
_0828
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 956.009 kb on - strand, within Shewana3_0824 at 956.024 kb on + strand, within Shewana3_0824 at 956.134 kb on - strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.306 kb on + strand, within Shewana3_0824 at 956.402 kb on + strand at 956.586 kb on - strand at 956.703 kb on - strand, within Shewana3_0825 at 956.861 kb on + strand at 957.042 kb on + strand at 957.167 kb on + strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.217 kb on - strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.442 kb on + strand, within Shewana3_0826 at 957.568 kb on - strand, within Shewana3_0826 at 957.653 kb on + strand at 957.661 kb on - strand at 957.663 kb on - strand at 957.663 kb on - strand at 957.881 kb on - strand, within Shewana3_0827 at 958.002 kb on - strand at 958.366 kb on - strand, within Shewana3_0827 at 958.366 kb on - strand, within Shewana3_0827 at 958.432 kb on - strand at 958.531 kb on + strand at 958.539 kb on - strand at 958.555 kb on - strand, within Shewana3_0828 at 958.562 kb on + strand, within Shewana3_0828 at 958.622 kb on - strand, within Shewana3_0828
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 956,009 - Shewana3_0824 0.50 +0.6 956,024 + Shewana3_0824 0.52 +0.2 956,134 - Shewana3_0824 0.65 -1.3 956,306 + Shewana3_0824 0.86 +0.7 956,306 + Shewana3_0824 0.86 +0.2 956,402 + +0.8 956,586 - +0.8 956,703 - Shewana3_0825 0.44 +1.1 956,861 + -2.0 957,042 + -1.3 957,167 + Shewana3_0826 0.26 +0.8 957,217 - Shewana3_0826 0.34 -2.3 957,217 - Shewana3_0826 0.34 -1.3 957,217 - Shewana3_0826 0.34 -0.2 957,442 + Shewana3_0826 0.69 -2.8 957,442 + Shewana3_0826 0.69 -2.2 957,568 - Shewana3_0826 0.88 -1.6 957,653 + +0.2 957,661 - -0.5 957,663 - -0.7 957,663 - -1.3 957,881 - Shewana3_0827 0.12 +1.2 958,002 - -0.8 958,366 - Shewana3_0827 0.82 -1.6 958,366 - Shewana3_0827 0.82 -1.0 958,432 - +0.1 958,531 + -1.0 958,539 - +0.2 958,555 - Shewana3_0828 0.14 -0.4 958,562 + Shewana3_0828 0.15 +0.2 958,622 - Shewana3_0828 0.30 +0.3
Or see this region's nucleotide sequence