Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0818

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0817 and Shewana3_0818 are separated by 876 nucleotidesShewana3_0818 and Shewana3_0819 are separated by 434 nucleotides Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810 _0817 Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175 _0818 Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 947,610 to 950,804 _0819 Position (kb) 946 947 948Strain fitness (log2 ratio) -2 -1 0 1at 945.901 kb on - strandat 945.963 kb on - strandat 946.012 kb on + strandat 946.274 kb on + strandat 946.299 kb on + strandat 946.299 kb on + strandat 946.299 kb on + strandat 946.319 kb on + strandat 946.319 kb on + strandat 946.544 kb on - strandat 946.591 kb on + strandat 946.591 kb on + strandat 946.726 kb on - strandat 946.809 kb on - strand, within Shewana3_0818at 946.877 kb on + strand, within Shewana3_0818at 946.877 kb on - strand, within Shewana3_0818at 946.959 kb on - strand, within Shewana3_0818at 947.158 kb on - strandat 947.163 kb on + strandat 947.182 kb on - strandat 947.294 kb on - strandat 947.354 kb on + strandat 947.471 kb on + strandat 947.471 kb on + strandat 947.699 kb on + strandat 947.777 kb on - strandat 947.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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945,901 - -1.5
945,963 - -0.3
946,012 + -0.1
946,274 + +0.6
946,299 + -0.2
946,299 + -0.5
946,299 + -0.5
946,319 + -1.1
946,319 + -0.4
946,544 - -0.7
946,591 + +0.5
946,591 + +0.7
946,726 - -1.4
946,809 - Shewana3_0818 0.25 -0.8
946,877 + Shewana3_0818 0.39 +1.7
946,877 - Shewana3_0818 0.39 -1.8
946,959 - Shewana3_0818 0.56 +1.2
947,158 - -2.1
947,163 + +0.6
947,182 - -1.5
947,294 - -1.3
947,354 + -0.2
947,471 + +0.5
947,471 + +0.6
947,699 + -1.2
947,777 - +1.0
947,842 - +0.8

Or see this region's nucleotide sequence