Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0803 and Shewana3_0804 are separated by 145 nucleotides Shewana3_0804 and Shewana3_0805 are separated by 24 nucleotides
Shewana3_0803: Shewana3_0803 - MORN repeat-containing protein (RefSeq), at 926,008 to 928,281
_0803
Shewana3_0804: Shewana3_0804 - cupin 2 domain-containing protein (RefSeq), at 928,427 to 928,750
_0804
Shewana3_0805: Shewana3_0805 - hypothetical protein (RefSeq), at 928,775 to 929,947
_0805
Position (kb) 928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 927.633 kb on + strand, within Shewana3_0803 at 927.714 kb on - strand, within Shewana3_0803 at 927.814 kb on + strand, within Shewana3_0803 at 927.822 kb on - strand, within Shewana3_0803 at 927.831 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 927.903 kb on - strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.019 kb on + strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.027 kb on - strand, within Shewana3_0803 at 928.095 kb on - strand at 928.177 kb on - strand at 928.198 kb on + strand at 928.208 kb on + strand at 928.504 kb on + strand, within Shewana3_0804 at 928.512 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.646 kb on - strand, within Shewana3_0804 at 928.670 kb on - strand, within Shewana3_0804 at 928.694 kb on - strand, within Shewana3_0804 at 928.716 kb on - strand, within Shewana3_0804 at 928.920 kb on + strand, within Shewana3_0805 at 929.029 kb on + strand, within Shewana3_0805 at 929.066 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805 at 929.386 kb on + strand, within Shewana3_0805
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 927,633 + Shewana3_0803 0.71 -1.0 927,714 - Shewana3_0803 0.75 -0.8 927,814 + Shewana3_0803 0.79 -0.7 927,822 - Shewana3_0803 0.80 -1.0 927,831 - Shewana3_0803 0.80 -3.9 927,903 - Shewana3_0803 0.83 +0.8 927,903 - Shewana3_0803 0.83 -0.3 928,019 + Shewana3_0803 0.88 -0.3 928,019 + Shewana3_0803 0.88 +0.3 928,027 - Shewana3_0803 0.89 -2.3 928,027 - Shewana3_0803 0.89 -0.8 928,095 - -1.1 928,177 - -1.0 928,198 + -0.5 928,208 + +0.4 928,504 + Shewana3_0804 0.24 -0.9 928,512 - Shewana3_0804 0.26 -0.3 928,646 - Shewana3_0804 0.68 +0.2 928,646 - Shewana3_0804 0.68 -1.9 928,670 - Shewana3_0804 0.75 -0.5 928,694 - Shewana3_0804 0.82 -0.8 928,716 - Shewana3_0804 0.89 -0.8 928,920 + Shewana3_0805 0.12 +0.5 929,029 + Shewana3_0805 0.22 +0.8 929,066 + Shewana3_0805 0.25 -2.6 929,386 + Shewana3_0805 0.52 -0.1 929,386 + Shewana3_0805 0.52 -1.5
Or see this region's nucleotide sequence