Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0798 and Shewana3_0799 are separated by 62 nucleotides Shewana3_0799 and Shewana3_0800 are separated by 187 nucleotides Shewana3_0800 and Shewana3_0801 are separated by 142 nucleotides Shewana3_0801 and Shewana3_0802 are separated by 25 nucleotides
Shewana3_0798: Shewana3_0798 - DNA-binding transcriptional regulator AsnC (RefSeq), at 921,368 to 921,862
_0798
Shewana3_0799: Shewana3_0799 - ribosomal large subunit pseudouridine synthase A (RefSeq), at 921,925 to 922,602
_0799
Shewana3_0800: Shewana3_0800 - peptidase U32 (RefSeq), at 922,790 to 924,706
_0800
Shewana3_0801: Shewana3_0801 - hypothetical protein (RefSeq), at 924,849 to 925,223
_0801
Shewana3_0802: Shewana3_0802 - abortive infection protein (RefSeq), at 925,249 to 926,001
_0802
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 921.928 kb on + strand at 921.984 kb on - strand at 922.008 kb on + strand, within Shewana3_0799 at 922.141 kb on - strand, within Shewana3_0799 at 922.153 kb on - strand, within Shewana3_0799 at 922.153 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.182 kb on - strand, within Shewana3_0799 at 922.230 kb on + strand, within Shewana3_0799 at 922.471 kb on + strand, within Shewana3_0799 at 922.755 kb on - strand at 922.883 kb on + strand at 922.981 kb on + strand at 923.037 kb on - strand, within Shewana3_0800 at 923.119 kb on + strand, within Shewana3_0800 at 923.192 kb on - strand, within Shewana3_0800 at 923.443 kb on - strand, within Shewana3_0800 at 923.551 kb on - strand, within Shewana3_0800 at 923.655 kb on + strand, within Shewana3_0800 at 923.990 kb on + strand, within Shewana3_0800 at 923.998 kb on - strand, within Shewana3_0800 at 924.137 kb on + strand, within Shewana3_0800 at 924.265 kb on + strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.273 kb on - strand, within Shewana3_0800 at 924.527 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.591 kb on + strand at 924.943 kb on + strand, within Shewana3_0801 at 925.394 kb on + strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.402 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.404 kb on - strand, within Shewana3_0802 at 925.515 kb on - strand, within Shewana3_0802 at 925.555 kb on + strand, within Shewana3_0802 at 925.563 kb on - strand, within Shewana3_0802 at 925.638 kb on - strand, within Shewana3_0802 at 925.689 kb on - strand, within Shewana3_0802
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 921,928 + -1.8 921,984 - -0.5 922,008 + Shewana3_0799 0.12 -0.1 922,141 - Shewana3_0799 0.32 -0.1 922,153 - Shewana3_0799 0.34 -0.5 922,153 - Shewana3_0799 0.34 -1.4 922,182 - Shewana3_0799 0.38 -2.7 922,182 - Shewana3_0799 0.38 -0.4 922,182 - Shewana3_0799 0.38 -1.3 922,230 + Shewana3_0799 0.45 -1.5 922,471 + Shewana3_0799 0.81 -0.8 922,755 - -0.6 922,883 + +0.7 922,981 + +0.0 923,037 - Shewana3_0800 0.13 +0.5 923,119 + Shewana3_0800 0.17 +0.9 923,192 - Shewana3_0800 0.21 +0.8 923,443 - Shewana3_0800 0.34 -0.9 923,551 - Shewana3_0800 0.40 -0.6 923,655 + Shewana3_0800 0.45 -0.0 923,990 + Shewana3_0800 0.63 +0.8 923,998 - Shewana3_0800 0.63 -0.6 924,137 + Shewana3_0800 0.70 +1.3 924,265 + Shewana3_0800 0.77 +0.9 924,273 - Shewana3_0800 0.77 -1.6 924,273 - Shewana3_0800 0.77 -0.2 924,273 - Shewana3_0800 0.77 -0.8 924,527 + +0.9 924,591 + +0.9 924,591 + +0.2 924,591 + +0.3 924,943 + Shewana3_0801 0.25 +1.1 925,394 + Shewana3_0802 0.19 +0.3 925,402 - Shewana3_0802 0.20 -0.2 925,402 - Shewana3_0802 0.20 -1.3 925,402 - Shewana3_0802 0.20 -1.1 925,402 - Shewana3_0802 0.20 -0.5 925,404 - Shewana3_0802 0.21 -0.4 925,404 - Shewana3_0802 0.21 -0.6 925,404 - Shewana3_0802 0.21 -0.4 925,515 - Shewana3_0802 0.35 -0.9 925,555 + Shewana3_0802 0.41 -0.7 925,563 - Shewana3_0802 0.42 -0.3 925,638 - Shewana3_0802 0.52 -0.2 925,689 - Shewana3_0802 0.58 -2.3
Or see this region's nucleotide sequence