Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0794 and Shewana3_0795 overlap by 4 nucleotides Shewana3_0795 and Shewana3_0796 are separated by 143 nucleotides Shewana3_0796 and Shewana3_0797 are separated by 62 nucleotides
Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501
_0794
Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268
_0795
Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915
_0796
Shewana3_0797: Shewana3_0797 - protease domain-containing protein (RefSeq), at 916,978 to 921,159
_0797
Position (kb)
916
917 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 915.727 kb on - strand, within Shewana3_0795 at 915.853 kb on - strand, within Shewana3_0795 at 915.910 kb on + strand, within Shewana3_0795 at 915.951 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 915.966 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.043 kb on - strand, within Shewana3_0795 at 916.099 kb on + strand, within Shewana3_0795 at 916.133 kb on + strand, within Shewana3_0795 at 916.189 kb on + strand, within Shewana3_0795 at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.222 kb on - strand at 916.247 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.249 kb on + strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.257 kb on - strand at 916.409 kb on + strand at 916.414 kb on + strand at 916.414 kb on + strand at 916.524 kb on - strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.564 kb on + strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.572 kb on - strand, within Shewana3_0796 at 916.633 kb on + strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand, within Shewana3_0796 at 916.641 kb on - strand at 916.641 kb on - strand, within Shewana3_0796 at 916.853 kb on + strand, within Shewana3_0796 at 916.885 kb on - strand at 917.022 kb on - strand at 917.028 kb on + strand at 917.058 kb on + strand at 917.064 kb on + strand at 917.066 kb on - strand at 917.095 kb on - strand at 917.102 kb on + strand at 917.199 kb on - strand at 917.234 kb on - strand at 917.307 kb on + strand at 917.628 kb on + strand, within Shewana3_0797 at 917.677 kb on - strand, within Shewana3_0797
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 915,727 - Shewana3_0795 0.30 +0.8 915,853 - Shewana3_0795 0.46 +0.4 915,910 + Shewana3_0795 0.53 +0.2 915,951 - Shewana3_0795 0.59 -2.3 915,966 - Shewana3_0795 0.61 -1.6 915,966 - Shewana3_0795 0.61 -1.3 916,043 - Shewana3_0795 0.71 -0.2 916,043 - Shewana3_0795 0.71 -3.0 916,099 + Shewana3_0795 0.78 +0.1 916,133 + Shewana3_0795 0.82 +0.4 916,189 + Shewana3_0795 0.90 +0.1 916,222 - -1.3 916,222 - +0.8 916,222 - -0.2 916,222 - -2.0 916,222 - +1.8 916,247 + -2.3 916,249 + +0.0 916,249 + -0.4 916,249 + -0.4 916,249 + -0.1 916,249 + +0.5 916,257 - -1.7 916,257 - -0.1 916,257 - +0.8 916,257 - -1.2 916,409 + +0.7 916,414 + -1.1 916,414 + -0.5 916,524 - Shewana3_0796 0.22 +0.8 916,564 + Shewana3_0796 0.30 -0.1 916,564 + Shewana3_0796 0.30 -1.2 916,564 + Shewana3_0796 0.30 -0.9 916,572 - Shewana3_0796 0.32 -1.8 916,572 - Shewana3_0796 0.32 +0.2 916,572 - Shewana3_0796 0.32 -1.2 916,633 + Shewana3_0796 0.44 +0.6 916,641 - Shewana3_0796 0.45 -1.2 916,641 - Shewana3_0796 0.45 -1.0 916,641 - +1.8 916,641 - Shewana3_0796 0.45 -0.5 916,853 + Shewana3_0796 0.88 -0.4 916,885 - +0.8 917,022 - +0.6 917,028 + +0.2 917,058 + -0.6 917,064 + -2.4 917,066 - +1.0 917,095 - +0.5 917,102 + -2.7 917,199 - +0.8 917,234 - +0.5 917,307 + +0.8 917,628 + Shewana3_0797 0.16 -0.3 917,677 - Shewana3_0797 0.17 +0.8
Or see this region's nucleotide sequence