Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0789 and Shewana3_0790 are separated by 198 nucleotides Shewana3_0790 and Shewana3_0791 are separated by 168 nucleotides
Shewana3_0789: Shewana3_0789 - sterol desaturase family protein (RefSeq), at 909,849 to 910,712
_0789
Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546
_0790
Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112
_0791
Position (kb) 910
911
912 Strain fitness (log2 ratio) -2
-1
0
1 at 910.047 kb on + strand, within Shewana3_0789 at 910.064 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.120 kb on + strand, within Shewana3_0789 at 910.128 kb on - strand, within Shewana3_0789 at 910.138 kb on - strand, within Shewana3_0789 at 910.171 kb on - strand, within Shewana3_0789 at 910.185 kb on - strand, within Shewana3_0789 at 910.259 kb on + strand, within Shewana3_0789 at 910.424 kb on - strand, within Shewana3_0789 at 910.429 kb on - strand, within Shewana3_0789 at 910.579 kb on + strand, within Shewana3_0789 at 910.768 kb on - strand at 910.796 kb on - strand at 910.972 kb on - strand at 911.086 kb on + strand, within Shewana3_0790 at 911.099 kb on + strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.181 kb on - strand, within Shewana3_0790 at 911.242 kb on - strand, within Shewana3_0790 at 911.407 kb on - strand, within Shewana3_0790 at 911.515 kb on + strand at 911.515 kb on + strand at 911.617 kb on - strand at 911.791 kb on + strand at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 911.964 kb on + strand, within Shewana3_0791 at 912.344 kb on + strand, within Shewana3_0791 at 912.360 kb on + strand, within Shewana3_0791
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 910,047 + Shewana3_0789 0.23 -1.0 910,064 + Shewana3_0789 0.25 +0.3 910,120 + Shewana3_0789 0.31 -0.2 910,120 + Shewana3_0789 0.31 -0.1 910,128 - Shewana3_0789 0.32 +0.0 910,138 - Shewana3_0789 0.33 -0.0 910,171 - Shewana3_0789 0.37 +1.0 910,185 - Shewana3_0789 0.39 -0.6 910,259 + Shewana3_0789 0.47 -0.1 910,424 - Shewana3_0789 0.67 -2.4 910,429 - Shewana3_0789 0.67 -1.2 910,579 + Shewana3_0789 0.84 -0.9 910,768 - -0.7 910,796 - -1.8 910,972 - -0.6 911,086 + Shewana3_0790 0.28 -0.3 911,099 + Shewana3_0790 0.30 +1.1 911,181 - Shewana3_0790 0.42 -1.2 911,181 - Shewana3_0790 0.42 +0.0 911,242 - Shewana3_0790 0.52 -1.4 911,407 - Shewana3_0790 0.78 -2.2 911,515 + +0.2 911,515 + -1.7 911,617 - -0.1 911,791 + +0.0 911,964 + Shewana3_0791 0.18 +0.1 911,964 + Shewana3_0791 0.18 -0.3 911,964 + Shewana3_0791 0.18 -0.8 912,344 + Shewana3_0791 0.45 +0.3 912,360 + Shewana3_0791 0.46 +0.7
Or see this region's nucleotide sequence