Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0783 and Shewana3_0784 are separated by 151 nucleotides Shewana3_0784 and Shewana3_0785 are separated by 69 nucleotides Shewana3_0785 and Shewana3_0786 are separated by 33 nucleotides Shewana3_0786 and Shewana3_0787 are separated by 184 nucleotides
Shewana3_0783: Shewana3_0783 - major facilitator transporter (RefSeq), at 904,676 to 906,067
_0783
Shewana3_0784: Shewana3_0784 - hypothetical protein (RefSeq), at 906,219 to 906,539
_0784
Shewana3_0785: Shewana3_0785 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 906,609 to 907,196
_0785
Shewana3_0786: Shewana3_0786 - hypothetical protein (RefSeq), at 907,230 to 907,808
_0786
Shewana3_0787: Shewana3_0787 - OmpA-like transmembrane domain-containing protein (RefSeq), at 907,993 to 908,496
_0787
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1 at 905.759 kb on - strand, within Shewana3_0783 at 905.872 kb on - strand, within Shewana3_0783 at 906.207 kb on - strand at 906.212 kb on + strand at 906.217 kb on + strand at 906.217 kb on + strand at 906.230 kb on + strand at 906.302 kb on + strand, within Shewana3_0784 at 906.578 kb on + strand at 906.586 kb on - strand at 906.752 kb on - strand, within Shewana3_0785 at 906.946 kb on - strand, within Shewana3_0785 at 907.166 kb on + strand at 907.406 kb on - strand, within Shewana3_0786 at 907.670 kb on + strand, within Shewana3_0786 at 907.893 kb on + strand at 907.901 kb on - strand at 907.916 kb on - strand at 907.985 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 908.196 kb on + strand, within Shewana3_0787
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 905,759 - Shewana3_0783 0.78 -0.3 905,872 - Shewana3_0783 0.86 +0.4 906,207 - +0.4 906,212 + -0.5 906,217 + -1.3 906,217 + -0.8 906,230 + +0.3 906,302 + Shewana3_0784 0.26 -0.5 906,578 + +0.4 906,586 - +0.4 906,752 - Shewana3_0785 0.24 +1.2 906,946 - Shewana3_0785 0.57 +0.5 907,166 + -2.5 907,406 - Shewana3_0786 0.30 +0.7 907,670 + Shewana3_0786 0.76 -0.2 907,893 + +0.5 907,901 - +0.8 907,916 - -0.7 907,985 + +0.0 907,990 + +0.6 907,990 + +1.0 907,990 + +0.8 908,196 + Shewana3_0787 0.40 +0.0
Or see this region's nucleotide sequence