Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0775 and Shewana3_0776 are separated by 163 nucleotides Shewana3_0776 and Shewana3_0777 are separated by 174 nucleotides
Shewana3_0775: Shewana3_0775 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 896,881 to 897,729
_0775
Shewana3_0776: Shewana3_0776 - hypothetical protein (RefSeq), at 897,893 to 898,765
_0776
Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499
_0777
Position (kb) 897
898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 897.701 kb on + strand at 897.834 kb on + strand at 897.842 kb on - strand at 897.991 kb on - strand, within Shewana3_0776 at 898.059 kb on + strand, within Shewana3_0776 at 898.185 kb on + strand, within Shewana3_0776 at 898.317 kb on + strand, within Shewana3_0776 at 898.317 kb on + strand, within Shewana3_0776 at 898.338 kb on + strand, within Shewana3_0776 at 898.394 kb on - strand, within Shewana3_0776 at 898.475 kb on + strand, within Shewana3_0776 at 898.476 kb on + strand, within Shewana3_0776 at 898.476 kb on + strand, within Shewana3_0776 at 898.507 kb on + strand, within Shewana3_0776 at 898.552 kb on - strand, within Shewana3_0776 at 898.629 kb on - strand, within Shewana3_0776 at 898.666 kb on + strand, within Shewana3_0776 at 899.147 kb on - strand, within Shewana3_0777 at 899.509 kb on - strand, within Shewana3_0777
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 897,701 + +1.0 897,834 + -0.1 897,842 - -1.0 897,991 - Shewana3_0776 0.11 -1.6 898,059 + Shewana3_0776 0.19 -0.7 898,185 + Shewana3_0776 0.33 -0.6 898,317 + Shewana3_0776 0.49 +0.1 898,317 + Shewana3_0776 0.49 -0.1 898,338 + Shewana3_0776 0.51 -1.0 898,394 - Shewana3_0776 0.57 -2.1 898,475 + Shewana3_0776 0.67 -0.5 898,476 + Shewana3_0776 0.67 -0.4 898,476 + Shewana3_0776 0.67 -0.3 898,507 + Shewana3_0776 0.70 -0.2 898,552 - Shewana3_0776 0.75 -1.5 898,629 - Shewana3_0776 0.84 -0.8 898,666 + Shewana3_0776 0.89 -1.8 899,147 - Shewana3_0777 0.13 -1.4 899,509 - Shewana3_0777 0.36 -0.0
Or see this region's nucleotide sequence