Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0772 and Shewana3_0773 overlap by 1 nucleotides Shewana3_0773 and Shewana3_0774 are separated by 144 nucleotides Shewana3_0774 and Shewana3_0775 are separated by 57 nucleotides
Shewana3_0772: Shewana3_0772 - invasion gene expression up-regulator, SirB (RefSeq), at 894,248 to 894,643
_0772
Shewana3_0773: Shewana3_0773 - hypothetical protein (RefSeq), at 894,643 to 895,431
_0773
Shewana3_0774: Shewana3_0774 - hypothetical protein (RefSeq), at 895,576 to 896,823
_0774
Shewana3_0775: Shewana3_0775 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 896,881 to 897,729
_0775
Position (kb) 895
896
897 Strain fitness (log2 ratio) -1
0
1 at 894.899 kb on + strand, within Shewana3_0773 at 894.934 kb on + strand, within Shewana3_0773 at 894.990 kb on + strand, within Shewana3_0773 at 895.101 kb on + strand, within Shewana3_0773 at 895.594 kb on + strand at 895.640 kb on + strand at 895.829 kb on + strand, within Shewana3_0774 at 896.219 kb on + strand, within Shewana3_0774 at 896.221 kb on + strand, within Shewana3_0774 at 896.252 kb on + strand, within Shewana3_0774 at 896.722 kb on + strand at 896.752 kb on + strand at 896.774 kb on + strand at 896.833 kb on + strand at 896.870 kb on + strand at 897.701 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 894,899 + Shewana3_0773 0.32 +0.1 894,934 + Shewana3_0773 0.37 -0.2 894,990 + Shewana3_0773 0.44 -0.5 895,101 + Shewana3_0773 0.58 -0.8 895,594 + +0.9 895,640 + -0.1 895,829 + Shewana3_0774 0.20 +0.9 896,219 + Shewana3_0774 0.52 +0.3 896,221 + Shewana3_0774 0.52 +1.1 896,252 + Shewana3_0774 0.54 +1.2 896,722 + +0.9 896,752 + +0.6 896,774 + +0.3 896,833 + +0.1 896,870 + +0.1 897,701 + +1.0
Or see this region's nucleotide sequence