Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0747

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0745 and Shewana3_0746 are separated by 157 nucleotidesShewana3_0746 and Shewana3_0747 are separated by 3 nucleotidesShewana3_0747 and Shewana3_0748 are separated by 114 nucleotidesShewana3_0748 and Shewana3_0749 are separated by 24 nucleotides Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460 _0745 Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445 _0746 Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389 _0747 Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031 _0748 Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490 _0749 Position (kb) 866 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1at 865.510 kb on - strandat 865.530 kb on - strandat 865.629 kb on + strandat 865.655 kb on - strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.672 kb on + strandat 865.763 kb on - strand, within Shewana3_0746at 865.780 kb on - strand, within Shewana3_0746at 865.785 kb on - strand, within Shewana3_0746at 865.813 kb on - strand, within Shewana3_0746at 865.878 kb on + strand, within Shewana3_0746at 865.886 kb on - strand, within Shewana3_0746at 865.919 kb on - strand, within Shewana3_0746at 866.325 kb on - strand, within Shewana3_0746at 866.690 kb on + strand, within Shewana3_0747at 866.767 kb on + strand, within Shewana3_0747at 866.767 kb on + strand, within Shewana3_0747at 866.775 kb on - strand, within Shewana3_0747at 866.779 kb on + strand, within Shewana3_0747at 866.966 kb on - strand, within Shewana3_0747at 867.015 kb on - strand, within Shewana3_0747at 867.196 kb on + strand, within Shewana3_0747at 867.429 kb on - strand, within Shewana3_0747at 867.457 kb on + strand, within Shewana3_0747at 867.486 kb on + strand, within Shewana3_0747at 867.752 kb on - strand, within Shewana3_0747at 867.952 kb on + strand, within Shewana3_0747at 868.029 kb on + strand, within Shewana3_0747at 868.043 kb on - strand, within Shewana3_0747at 868.152 kb on + strand, within Shewana3_0747at 868.160 kb on - strand, within Shewana3_0747at 868.230 kb on - strandat 868.325 kb on + strandat 868.627 kb on + strand, within Shewana3_0748at 868.627 kb on + strand, within Shewana3_0748at 868.627 kb on + strand, within Shewana3_0748at 868.689 kb on - strand, within Shewana3_0748at 868.707 kb on + strand, within Shewana3_0748at 868.792 kb on - strand, within Shewana3_0748at 868.956 kb on + strand, within Shewana3_0748at 868.981 kb on + strandat 869.079 kb on - strandat 869.162 kb on - strand, within Shewana3_0749

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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865,510 - -1.0
865,530 - +0.5
865,629 + -1.1
865,655 - -0.8
865,672 + -0.9
865,672 + +0.1
865,672 + -0.2
865,763 - Shewana3_0746 0.18 -3.5
865,780 - Shewana3_0746 0.20 -2.4
865,785 - Shewana3_0746 0.20 +0.2
865,813 - Shewana3_0746 0.24 -0.9
865,878 + Shewana3_0746 0.31 -0.7
865,886 - Shewana3_0746 0.32 -1.1
865,919 - Shewana3_0746 0.36 -1.5
866,325 - Shewana3_0746 0.85 -0.4
866,690 + Shewana3_0747 0.12 -0.7
866,767 + Shewana3_0747 0.16 -1.8
866,767 + Shewana3_0747 0.16 -0.5
866,775 - Shewana3_0747 0.17 -0.0
866,779 + Shewana3_0747 0.17 -2.3
866,966 - Shewana3_0747 0.27 +0.8
867,015 - Shewana3_0747 0.29 -0.8
867,196 + Shewana3_0747 0.38 +0.2
867,429 - Shewana3_0747 0.50 -0.6
867,457 + Shewana3_0747 0.52 -1.2
867,486 + Shewana3_0747 0.53 -3.5
867,752 - Shewana3_0747 0.67 -2.7
867,952 + Shewana3_0747 0.77 -1.2
868,029 + Shewana3_0747 0.81 -1.1
868,043 - Shewana3_0747 0.82 -0.3
868,152 + Shewana3_0747 0.88 -1.6
868,160 - Shewana3_0747 0.88 -2.2
868,230 - -1.6
868,325 + +0.2
868,627 + Shewana3_0748 0.23 +0.5
868,627 + Shewana3_0748 0.23 +0.7
868,627 + Shewana3_0748 0.23 +0.5
868,689 - Shewana3_0748 0.35 -1.9
868,707 + Shewana3_0748 0.38 +1.0
868,792 - Shewana3_0748 0.55 +0.2
868,956 + Shewana3_0748 0.86 +0.8
868,981 + +1.1
869,079 - +0.2
869,162 - Shewana3_0749 0.24 +0.2

Or see this region's nucleotide sequence