Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0745 and Shewana3_0746 are separated by 157 nucleotides Shewana3_0746 and Shewana3_0747 are separated by 3 nucleotides Shewana3_0747 and Shewana3_0748 are separated by 114 nucleotides Shewana3_0748 and Shewana3_0749 are separated by 24 nucleotides
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445
_0746
Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389
_0747
Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031
_0748
Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490
_0749
Position (kb)
866
867
868
869 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 865.510 kb on - strand at 865.530 kb on - strand at 865.629 kb on + strand at 865.655 kb on - strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.763 kb on - strand, within Shewana3_0746 at 865.780 kb on - strand, within Shewana3_0746 at 865.785 kb on - strand, within Shewana3_0746 at 865.813 kb on - strand, within Shewana3_0746 at 865.878 kb on + strand, within Shewana3_0746 at 865.886 kb on - strand, within Shewana3_0746 at 865.919 kb on - strand, within Shewana3_0746 at 866.325 kb on - strand, within Shewana3_0746 at 866.690 kb on + strand, within Shewana3_0747 at 866.767 kb on + strand, within Shewana3_0747 at 866.767 kb on + strand, within Shewana3_0747 at 866.775 kb on - strand, within Shewana3_0747 at 866.779 kb on + strand, within Shewana3_0747 at 866.966 kb on - strand, within Shewana3_0747 at 867.015 kb on - strand, within Shewana3_0747 at 867.196 kb on + strand, within Shewana3_0747 at 867.429 kb on - strand, within Shewana3_0747 at 867.457 kb on + strand, within Shewana3_0747 at 867.486 kb on + strand, within Shewana3_0747 at 867.752 kb on - strand, within Shewana3_0747 at 867.952 kb on + strand, within Shewana3_0747 at 868.029 kb on + strand, within Shewana3_0747 at 868.043 kb on - strand, within Shewana3_0747 at 868.152 kb on + strand, within Shewana3_0747 at 868.160 kb on - strand, within Shewana3_0747 at 868.230 kb on - strand at 868.325 kb on + strand at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.689 kb on - strand, within Shewana3_0748 at 868.707 kb on + strand, within Shewana3_0748 at 868.792 kb on - strand, within Shewana3_0748 at 868.956 kb on + strand, within Shewana3_0748 at 868.981 kb on + strand at 869.079 kb on - strand at 869.162 kb on - strand, within Shewana3_0749
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 865,510 - -1.0 865,530 - +0.5 865,629 + -1.1 865,655 - -0.8 865,672 + -0.9 865,672 + +0.1 865,672 + -0.2 865,763 - Shewana3_0746 0.18 -3.5 865,780 - Shewana3_0746 0.20 -2.4 865,785 - Shewana3_0746 0.20 +0.2 865,813 - Shewana3_0746 0.24 -0.9 865,878 + Shewana3_0746 0.31 -0.7 865,886 - Shewana3_0746 0.32 -1.1 865,919 - Shewana3_0746 0.36 -1.5 866,325 - Shewana3_0746 0.85 -0.4 866,690 + Shewana3_0747 0.12 -0.7 866,767 + Shewana3_0747 0.16 -1.8 866,767 + Shewana3_0747 0.16 -0.5 866,775 - Shewana3_0747 0.17 -0.0 866,779 + Shewana3_0747 0.17 -2.3 866,966 - Shewana3_0747 0.27 +0.8 867,015 - Shewana3_0747 0.29 -0.8 867,196 + Shewana3_0747 0.38 +0.2 867,429 - Shewana3_0747 0.50 -0.6 867,457 + Shewana3_0747 0.52 -1.2 867,486 + Shewana3_0747 0.53 -3.5 867,752 - Shewana3_0747 0.67 -2.7 867,952 + Shewana3_0747 0.77 -1.2 868,029 + Shewana3_0747 0.81 -1.1 868,043 - Shewana3_0747 0.82 -0.3 868,152 + Shewana3_0747 0.88 -1.6 868,160 - Shewana3_0747 0.88 -2.2 868,230 - -1.6 868,325 + +0.2 868,627 + Shewana3_0748 0.23 +0.5 868,627 + Shewana3_0748 0.23 +0.7 868,627 + Shewana3_0748 0.23 +0.5 868,689 - Shewana3_0748 0.35 -1.9 868,707 + Shewana3_0748 0.38 +1.0 868,792 - Shewana3_0748 0.55 +0.2 868,956 + Shewana3_0748 0.86 +0.8 868,981 + +1.1 869,079 - +0.2 869,162 - Shewana3_0749 0.24 +0.2
Or see this region's nucleotide sequence