Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and modB overlap by 7 nucleotides modB and Shewana3_0743 overlap by 1 nucleotides Shewana3_0743 and Shewana3_0744 are separated by 202 nucleotides Shewana3_0744 and Shewana3_0745 are separated by 16 nucleotides
Shewana3_0741: modC - molybdate transporter ATP-binding protein (RefSeq), at 860,679 to 861,764
modC
Shewana3_0742: modB - molybdate ABC transporter permease protein (RefSeq), at 861,758 to 862,495
modB
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262
_0744
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2 at 861.720 kb on + strand at 861.728 kb on - strand at 861.728 kb on - strand at 861.821 kb on + strand at 861.994 kb on - strand, within modB at 862.165 kb on + strand, within modB at 862.173 kb on - strand, within modB at 862.248 kb on - strand, within modB at 862.256 kb on - strand, within modB at 862.314 kb on + strand, within modB at 862.318 kb on - strand, within modB at 862.500 kb on - strand at 862.554 kb on - strand at 862.734 kb on - strand, within Shewana3_0743 at 862.894 kb on + strand, within Shewana3_0743 at 862.919 kb on - strand, within Shewana3_0743 at 862.938 kb on + strand, within Shewana3_0743 at 863.007 kb on - strand, within Shewana3_0743 at 863.029 kb on + strand, within Shewana3_0743 at 863.037 kb on - strand, within Shewana3_0743 at 863.040 kb on - strand, within Shewana3_0743 at 863.230 kb on + strand at 863.231 kb on - strand at 863.467 kb on - strand at 863.737 kb on + strand, within Shewana3_0744 at 863.923 kb on - strand, within Shewana3_0744 at 863.924 kb on - strand, within Shewana3_0744 at 864.047 kb on + strand, within Shewana3_0744 at 864.110 kb on - strand, within Shewana3_0744 at 864.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 861,720 + +0.2 861,728 - -1.5 861,728 - -2.4 861,821 + -0.0 861,994 - modB Shewana3_0742 0.32 -0.8 862,165 + modB Shewana3_0742 0.55 +0.1 862,173 - modB Shewana3_0742 0.56 -1.4 862,248 - modB Shewana3_0742 0.66 -0.4 862,256 - modB Shewana3_0742 0.67 +1.8 862,314 + modB Shewana3_0742 0.75 -1.4 862,318 - modB Shewana3_0742 0.76 +0.7 862,500 - +0.8 862,554 - +0.4 862,734 - Shewana3_0743 0.30 -0.7 862,894 + Shewana3_0743 0.51 -0.2 862,919 - Shewana3_0743 0.54 -0.8 862,938 + Shewana3_0743 0.56 +0.3 863,007 - Shewana3_0743 0.65 -1.4 863,029 + Shewana3_0743 0.68 +0.2 863,037 - Shewana3_0743 0.69 -0.3 863,040 - Shewana3_0743 0.69 +0.3 863,230 + -0.3 863,231 - -0.2 863,467 - +0.1 863,737 + Shewana3_0744 0.33 -0.3 863,923 - Shewana3_0744 0.56 -1.6 863,924 - Shewana3_0744 0.57 +0.1 864,047 + Shewana3_0744 0.72 -0.3 864,110 - Shewana3_0744 0.80 -1.9 864,206 - -0.0
Or see this region's nucleotide sequence