Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0667 and Shewana3_0668 are separated by 212 nucleotides Shewana3_0668 and Shewana3_0669 overlap by 14 nucleotides Shewana3_0669 and Shewana3_0670 overlap by 4 nucleotides
Shewana3_0667: Shewana3_0667 - magnesium transporter (RefSeq), at 788,512 to 789,876
_0667
Shewana3_0668: Shewana3_0668 - HPr family phosphocarrier protein (RefSeq), at 790,089 to 790,364
_0668
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Shewana3_0670: Shewana3_0670 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 791,202 to 791,645
_0670
Position (kb) 790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 789.430 kb on + strand, within Shewana3_0667 at 789.563 kb on + strand, within Shewana3_0667 at 789.600 kb on - strand, within Shewana3_0667 at 789.653 kb on + strand, within Shewana3_0667 at 789.680 kb on + strand, within Shewana3_0667 at 789.684 kb on + strand, within Shewana3_0667 at 789.864 kb on - strand at 789.956 kb on + strand at 790.066 kb on + strand at 790.180 kb on + strand, within Shewana3_0668 at 790.180 kb on - strand, within Shewana3_0668 at 790.282 kb on - strand, within Shewana3_0668 at 790.883 kb on - strand, within Shewana3_0669 at 790.885 kb on - strand, within Shewana3_0669 at 790.968 kb on + strand, within Shewana3_0669 at 791.077 kb on - strand, within Shewana3_0669 at 791.128 kb on - strand at 791.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 789,430 + Shewana3_0667 0.67 -2.6 789,563 + Shewana3_0667 0.77 -2.8 789,600 - Shewana3_0667 0.80 +0.5 789,653 + Shewana3_0667 0.84 -2.0 789,680 + Shewana3_0667 0.86 -1.1 789,684 + Shewana3_0667 0.86 -2.9 789,864 - -0.4 789,956 + +0.1 790,066 + -0.4 790,180 + Shewana3_0668 0.33 -0.7 790,180 - Shewana3_0668 0.33 -2.5 790,282 - Shewana3_0668 0.70 -1.5 790,883 - Shewana3_0669 0.62 +0.2 790,885 - Shewana3_0669 0.62 -0.8 790,968 + Shewana3_0669 0.72 -0.3 791,077 - Shewana3_0669 0.85 +0.3 791,128 - -0.0 791,131 + +0.2
Or see this region's nucleotide sequence