Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0666 and Shewana3_0667 are separated by 74 nucleotides Shewana3_0667 and Shewana3_0668 are separated by 212 nucleotides Shewana3_0668 and Shewana3_0669 overlap by 14 nucleotides
Shewana3_0666: Shewana3_0666 - molybdate ABC transporter periplasmic molybdate-binding protein (RefSeq), at 787,610 to 788,437
_0666
Shewana3_0667: Shewana3_0667 - magnesium transporter (RefSeq), at 788,512 to 789,876
_0667
Shewana3_0668: Shewana3_0668 - HPr family phosphocarrier protein (RefSeq), at 790,089 to 790,364
_0668
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Position (kb) 788
789
790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 787.696 kb on + strand, within Shewana3_0666 at 787.707 kb on + strand, within Shewana3_0666 at 787.712 kb on - strand, within Shewana3_0666 at 787.731 kb on + strand, within Shewana3_0666 at 787.888 kb on + strand, within Shewana3_0666 at 787.896 kb on - strand, within Shewana3_0666 at 787.942 kb on + strand, within Shewana3_0666 at 787.970 kb on + strand, within Shewana3_0666 at 787.996 kb on - strand, within Shewana3_0666 at 788.165 kb on - strand, within Shewana3_0666 at 788.190 kb on - strand, within Shewana3_0666 at 788.316 kb on + strand, within Shewana3_0666 at 788.423 kb on - strand at 788.499 kb on + strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.507 kb on - strand at 788.591 kb on - strand at 788.596 kb on - strand at 788.757 kb on + strand, within Shewana3_0667 at 788.895 kb on + strand, within Shewana3_0667 at 788.988 kb on + strand, within Shewana3_0667 at 789.021 kb on - strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.025 kb on + strand, within Shewana3_0667 at 789.430 kb on + strand, within Shewana3_0667 at 789.563 kb on + strand, within Shewana3_0667 at 789.600 kb on - strand, within Shewana3_0667 at 789.653 kb on + strand, within Shewana3_0667 at 789.680 kb on + strand, within Shewana3_0667 at 789.684 kb on + strand, within Shewana3_0667 at 789.864 kb on - strand at 789.956 kb on + strand at 790.066 kb on + strand at 790.180 kb on + strand, within Shewana3_0668 at 790.180 kb on - strand, within Shewana3_0668 at 790.282 kb on - strand, within Shewana3_0668
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 787,696 + Shewana3_0666 0.10 +0.1 787,707 + Shewana3_0666 0.12 +0.5 787,712 - Shewana3_0666 0.12 -0.8 787,731 + Shewana3_0666 0.15 -0.5 787,888 + Shewana3_0666 0.34 +0.3 787,896 - Shewana3_0666 0.35 -4.0 787,942 + Shewana3_0666 0.40 +0.3 787,970 + Shewana3_0666 0.43 -0.1 787,996 - Shewana3_0666 0.47 -2.5 788,165 - Shewana3_0666 0.67 -1.7 788,190 - Shewana3_0666 0.70 +0.2 788,316 + Shewana3_0666 0.85 +0.1 788,423 - -0.6 788,499 + -2.5 788,507 - +0.1 788,507 - -0.2 788,507 - +1.0 788,507 - +0.2 788,507 - +0.0 788,507 - -0.7 788,591 - -0.5 788,596 - +0.1 788,757 + Shewana3_0667 0.18 -2.9 788,895 + Shewana3_0667 0.28 -1.7 788,988 + Shewana3_0667 0.35 -4.1 789,021 - Shewana3_0667 0.37 -0.1 789,025 + Shewana3_0667 0.38 -1.6 789,025 + Shewana3_0667 0.38 -2.8 789,430 + Shewana3_0667 0.67 -2.6 789,563 + Shewana3_0667 0.77 -2.8 789,600 - Shewana3_0667 0.80 +0.5 789,653 + Shewana3_0667 0.84 -2.0 789,680 + Shewana3_0667 0.86 -1.1 789,684 + Shewana3_0667 0.86 -2.9 789,864 - -0.4 789,956 + +0.1 790,066 + -0.4 790,180 + Shewana3_0668 0.33 -0.7 790,180 - Shewana3_0668 0.33 -2.5 790,282 - Shewana3_0668 0.70 -1.5
Or see this region's nucleotide sequence