Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0660 and Shewana3_0661 are separated by 34 nucleotides Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides Shewana3_0662 and Shewana3_0663 are separated by 270 nucleotides
Shewana3_0660: Shewana3_0660 - hypothetical protein (RefSeq), at 782,039 to 782,809
_0660
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 781.870 kb on + strand at 781.884 kb on - strand at 782.053 kb on - strand at 782.132 kb on + strand, within Shewana3_0660 at 782.187 kb on + strand, within Shewana3_0660 at 782.202 kb on - strand, within Shewana3_0660 at 782.284 kb on - strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.294 kb on + strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.368 kb on - strand, within Shewana3_0660 at 782.369 kb on + strand, within Shewana3_0660 at 782.397 kb on + strand, within Shewana3_0660 at 782.582 kb on + strand, within Shewana3_0660 at 782.623 kb on + strand, within Shewana3_0660 at 782.633 kb on + strand, within Shewana3_0660 at 782.752 kb on + strand at 782.784 kb on + strand at 782.836 kb on - strand at 782.865 kb on + strand at 782.891 kb on - strand at 783.109 kb on + strand, within Shewana3_0661 at 783.162 kb on + strand, within Shewana3_0661 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand at 783.814 kb on - strand, within Shewana3_0662 at 783.921 kb on - strand at 783.944 kb on + strand at 784.183 kb on - strand at 784.192 kb on + strand at 784.200 kb on - strand at 784.260 kb on + strand at 784.297 kb on - strand, within Shewana3_0663 at 784.344 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.425 kb on - strand, within Shewana3_0663
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 781,870 + -0.2 781,884 - -1.4 782,053 - -2.3 782,132 + Shewana3_0660 0.12 +0.3 782,187 + Shewana3_0660 0.19 +0.4 782,202 - Shewana3_0660 0.21 -0.5 782,284 - Shewana3_0660 0.32 -1.8 782,294 + Shewana3_0660 0.33 -0.1 782,294 + Shewana3_0660 0.33 +0.6 782,294 + Shewana3_0660 0.33 -0.4 782,368 - Shewana3_0660 0.43 +0.8 782,368 - Shewana3_0660 0.43 -1.4 782,368 - Shewana3_0660 0.43 -2.2 782,369 + Shewana3_0660 0.43 -0.1 782,397 + Shewana3_0660 0.46 -0.2 782,582 + Shewana3_0660 0.70 +0.2 782,623 + Shewana3_0660 0.76 +0.0 782,633 + Shewana3_0660 0.77 +0.2 782,752 + -0.2 782,784 + +0.4 782,836 - -0.0 782,865 + +0.1 782,891 - +0.5 783,109 + Shewana3_0661 0.45 -0.8 783,162 + Shewana3_0661 0.54 -1.9 783,340 - Shewana3_0661 0.85 +0.6 783,352 - Shewana3_0661 0.87 -0.5 783,385 - -0.1 783,534 + +0.1 783,814 - Shewana3_0662 0.65 +0.1 783,921 - +1.0 783,944 + +0.6 784,183 - -2.1 784,192 + +0.7 784,200 - -2.6 784,260 + +0.3 784,297 - Shewana3_0663 0.11 -0.3 784,344 - Shewana3_0663 0.16 -0.0 784,371 - Shewana3_0663 0.19 -2.8 784,371 - Shewana3_0663 0.19 -1.7 784,425 - Shewana3_0663 0.26 -1.8
Or see this region's nucleotide sequence