Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides Shewana3_0656 and Shewana3_0657 overlap by 8 nucleotides Shewana3_0657 and nrfA are separated by 224 nucleotides
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Shewana3_0657: Shewana3_0657 - nitrate/nitrite sensor protein NarQ (RefSeq), at 776,275 to 778,071
_0657
Shewana3_0658: nrfA - cytochrome c552 (RefSeq), at 778,296 to 779,717
nrfA
Position (kb) 776
777
778
779 Strain fitness (log2 ratio) -2
-1
0
1 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656 at 776.031 kb on + strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.079 kb on - strand, within Shewana3_0656 at 776.120 kb on + strand, within Shewana3_0656 at 776.168 kb on - strand, within Shewana3_0656 at 776.224 kb on - strand at 776.266 kb on + strand at 776.274 kb on - strand at 776.383 kb on + strand at 776.390 kb on - strand at 776.499 kb on - strand, within Shewana3_0657 at 776.553 kb on - strand, within Shewana3_0657 at 776.622 kb on + strand, within Shewana3_0657 at 776.629 kb on - strand, within Shewana3_0657 at 776.675 kb on - strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.723 kb on + strand, within Shewana3_0657 at 776.795 kb on + strand, within Shewana3_0657 at 776.811 kb on + strand, within Shewana3_0657 at 776.825 kb on + strand, within Shewana3_0657 at 777.131 kb on - strand, within Shewana3_0657 at 777.170 kb on - strand, within Shewana3_0657 at 777.192 kb on + strand, within Shewana3_0657 at 777.200 kb on - strand, within Shewana3_0657 at 777.445 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.450 kb on - strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.636 kb on + strand, within Shewana3_0657 at 777.702 kb on - strand, within Shewana3_0657 at 777.737 kb on + strand, within Shewana3_0657 at 777.837 kb on + strand, within Shewana3_0657 at 778.088 kb on + strand at 778.246 kb on + strand at 778.254 kb on - strand at 778.255 kb on - strand at 778.352 kb on - strand at 778.405 kb on - strand at 778.574 kb on + strand, within nrfA at 778.574 kb on + strand, within nrfA at 778.603 kb on - strand, within nrfA at 778.685 kb on - strand, within nrfA at 778.698 kb on + strand, within nrfA at 778.706 kb on - strand, within nrfA at 778.726 kb on - strand, within nrfA at 778.733 kb on + strand, within nrfA at 778.741 kb on - strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.042 kb on + strand, within nrfA at 779.050 kb on - strand, within nrfA at 779.050 kb on - strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 775,386 + Shewana3_0655 0.52 +0.5 775,537 + +0.7 775,537 + +0.6 775,758 - Shewana3_0656 0.17 +0.5 776,031 + Shewana3_0656 0.60 -1.0 776,079 - Shewana3_0656 0.68 -0.3 776,079 - Shewana3_0656 0.68 +0.6 776,120 + Shewana3_0656 0.74 -0.3 776,168 - Shewana3_0656 0.82 -0.2 776,224 - -0.2 776,266 + -1.1 776,274 - -0.5 776,383 + -1.7 776,390 - +0.4 776,499 - Shewana3_0657 0.12 +0.2 776,553 - Shewana3_0657 0.15 -0.7 776,622 + Shewana3_0657 0.19 -0.9 776,629 - Shewana3_0657 0.20 +0.0 776,675 - Shewana3_0657 0.22 -0.7 776,723 + Shewana3_0657 0.25 -1.0 776,723 + Shewana3_0657 0.25 -2.4 776,723 + Shewana3_0657 0.25 -0.6 776,795 + Shewana3_0657 0.29 -0.4 776,811 + Shewana3_0657 0.30 -0.6 776,825 + Shewana3_0657 0.31 -0.3 777,131 - Shewana3_0657 0.48 -2.6 777,170 - Shewana3_0657 0.50 +0.1 777,192 + Shewana3_0657 0.51 +0.6 777,200 - Shewana3_0657 0.51 -2.3 777,445 - Shewana3_0657 0.65 -1.8 777,450 - Shewana3_0657 0.65 -2.2 777,450 - Shewana3_0657 0.65 +1.0 777,636 + Shewana3_0657 0.76 -1.7 777,636 + Shewana3_0657 0.76 +0.1 777,702 - Shewana3_0657 0.79 -0.6 777,737 + Shewana3_0657 0.81 +0.3 777,837 + Shewana3_0657 0.87 +0.4 778,088 + -1.3 778,246 + +0.5 778,254 - -1.5 778,255 - -1.0 778,352 - -1.1 778,405 - -1.2 778,574 + nrfA Shewana3_0658 0.20 +0.6 778,574 + nrfA Shewana3_0658 0.20 +1.7 778,603 - nrfA Shewana3_0658 0.22 -0.8 778,685 - nrfA Shewana3_0658 0.27 +0.0 778,698 + nrfA Shewana3_0658 0.28 +0.6 778,706 - nrfA Shewana3_0658 0.29 -0.3 778,726 - nrfA Shewana3_0658 0.30 -0.3 778,733 + nrfA Shewana3_0658 0.31 +0.9 778,741 - nrfA Shewana3_0658 0.31 +0.0 779,042 + nrfA Shewana3_0658 0.52 -1.6 779,042 + nrfA Shewana3_0658 0.52 +0.4 779,050 - nrfA Shewana3_0658 0.53 -1.7 779,050 - nrfA Shewana3_0658 0.53 -1.1
Or see this region's nucleotide sequence