Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0642 and Shewana3_0643 are separated by 62 nucleotides Shewana3_0643 and Shewana3_0644 are separated by 407 nucleotides
Shewana3_0642: Shewana3_0642 - sodium:dicarboxylate symporter (RefSeq), at 758,809 to 760,059
_0642
Shewana3_0643: Shewana3_0643 - hypothetical protein (RefSeq), at 760,122 to 760,592
_0643
Shewana3_0644: Shewana3_0644 - hypothetical protein (RefSeq), at 761,000 to 761,488
_0644
Position (kb) 760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 759.140 kb on - strand, within Shewana3_0642 at 759.194 kb on + strand, within Shewana3_0642 at 759.228 kb on - strand, within Shewana3_0642 at 759.334 kb on + strand, within Shewana3_0642 at 759.383 kb on - strand, within Shewana3_0642 at 759.456 kb on + strand, within Shewana3_0642 at 759.606 kb on + strand, within Shewana3_0642 at 759.858 kb on - strand, within Shewana3_0642 at 759.942 kb on - strand at 759.958 kb on + strand at 759.961 kb on - strand at 759.966 kb on - strand at 759.994 kb on + strand at 760.107 kb on + strand at 760.182 kb on + strand, within Shewana3_0643 at 760.190 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.202 kb on - strand, within Shewana3_0643 at 760.252 kb on + strand, within Shewana3_0643 at 760.281 kb on - strand, within Shewana3_0643 at 760.451 kb on + strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.517 kb on - strand, within Shewana3_0643 at 760.592 kb on + strand at 760.761 kb on + strand at 760.968 kb on - strand at 760.976 kb on - strand at 761.229 kb on + strand, within Shewana3_0644 at 761.324 kb on - strand, within Shewana3_0644 at 761.325 kb on - strand, within Shewana3_0644 at 761.404 kb on - strand, within Shewana3_0644 at 761.422 kb on + strand, within Shewana3_0644 at 761.440 kb on + strand at 761.448 kb on - strand at 761.492 kb on + strand at 761.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 759,140 - Shewana3_0642 0.26 -1.1 759,194 + Shewana3_0642 0.31 +0.2 759,228 - Shewana3_0642 0.33 -1.5 759,334 + Shewana3_0642 0.42 +0.5 759,383 - Shewana3_0642 0.46 -2.9 759,456 + Shewana3_0642 0.52 +0.4 759,606 + Shewana3_0642 0.64 +0.6 759,858 - Shewana3_0642 0.84 -0.9 759,942 - -1.7 759,958 + +0.8 759,961 - -2.0 759,966 - -2.2 759,994 + +0.9 760,107 + +0.0 760,182 + Shewana3_0643 0.13 -0.8 760,190 - Shewana3_0643 0.14 +1.4 760,202 - Shewana3_0643 0.17 +0.6 760,202 - Shewana3_0643 0.17 +0.6 760,252 + Shewana3_0643 0.28 -0.2 760,281 - Shewana3_0643 0.34 +1.0 760,451 + Shewana3_0643 0.70 +0.2 760,517 - Shewana3_0643 0.84 +0.1 760,517 - Shewana3_0643 0.84 +0.8 760,592 + -0.3 760,761 + +0.4 760,968 - +0.6 760,976 - +2.0 761,229 + Shewana3_0644 0.47 +0.1 761,324 - Shewana3_0644 0.66 +1.1 761,325 - Shewana3_0644 0.66 +0.9 761,404 - Shewana3_0644 0.83 +0.3 761,422 + Shewana3_0644 0.86 -0.1 761,440 + +0.6 761,448 - +0.7 761,492 + -0.4 761,556 + -0.5
Or see this region's nucleotide sequence