Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0636 and Shewana3_0637 overlap by 4 nucleotides Shewana3_0637 and Shewana3_0638 are separated by 224 nucleotides
Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126
_0636
Shewana3_0637: Shewana3_0637 - two component LuxR family transcriptional regulator (RefSeq), at 751,123 to 751,734
_0637
Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) <small>(from data)</small>, at 751,959 to 755,630
_0638
Position (kb) 751
752 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 750.249 kb on + strand, within Shewana3_0636 at 750.348 kb on + strand, within Shewana3_0636 at 750.348 kb on + strand, within Shewana3_0636 at 750.374 kb on - strand, within Shewana3_0636 at 750.450 kb on + strand, within Shewana3_0636 at 750.518 kb on - strand, within Shewana3_0636 at 750.548 kb on + strand, within Shewana3_0636 at 750.669 kb on + strand, within Shewana3_0636 at 750.687 kb on + strand, within Shewana3_0636 at 750.806 kb on + strand, within Shewana3_0636 at 750.891 kb on - strand, within Shewana3_0636 at 750.915 kb on - strand, within Shewana3_0636 at 750.927 kb on + strand, within Shewana3_0636 at 750.988 kb on + strand at 750.990 kb on + strand at 751.128 kb on - strand at 751.263 kb on - strand, within Shewana3_0637 at 751.324 kb on - strand, within Shewana3_0637 at 751.338 kb on + strand, within Shewana3_0637 at 751.559 kb on + strand, within Shewana3_0637 at 751.567 kb on - strand, within Shewana3_0637 at 751.586 kb on + strand, within Shewana3_0637 at 751.805 kb on - strand at 751.878 kb on + strand at 751.894 kb on - strand at 751.988 kb on - strand at 752.330 kb on - strand, within Shewana3_0638 at 752.436 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.495 kb on + strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.503 kb on - strand, within Shewana3_0638 at 752.647 kb on + strand, within Shewana3_0638
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 750,249 + Shewana3_0636 0.56 +0.0 750,348 + Shewana3_0636 0.61 -0.1 750,348 + Shewana3_0636 0.61 -1.1 750,374 - Shewana3_0636 0.62 -0.5 750,450 + Shewana3_0636 0.66 -0.5 750,518 - Shewana3_0636 0.69 +0.1 750,548 + Shewana3_0636 0.71 +0.6 750,669 + Shewana3_0636 0.77 -0.1 750,687 + Shewana3_0636 0.78 -0.3 750,806 + Shewana3_0636 0.84 +0.7 750,891 - Shewana3_0636 0.88 -0.9 750,915 - Shewana3_0636 0.89 -0.2 750,927 + Shewana3_0636 0.90 +0.7 750,988 + +0.6 750,990 + -0.1 751,128 - +0.3 751,263 - Shewana3_0637 0.23 +0.1 751,324 - Shewana3_0637 0.33 -0.5 751,338 + Shewana3_0637 0.35 +0.4 751,559 + Shewana3_0637 0.71 -0.3 751,567 - Shewana3_0637 0.73 -1.3 751,586 + Shewana3_0637 0.76 -0.1 751,805 - -0.8 751,878 + +0.5 751,894 - -0.1 751,988 - -0.7 752,330 - Shewana3_0638 0.10 +0.1 752,436 + Shewana3_0638 0.13 +0.4 752,495 + Shewana3_0638 0.15 +0.7 752,495 + Shewana3_0638 0.15 +0.4 752,495 + Shewana3_0638 0.15 +0.5 752,495 + Shewana3_0638 0.15 -3.8 752,503 - Shewana3_0638 0.15 -0.1 752,503 - Shewana3_0638 0.15 -0.1 752,503 - Shewana3_0638 0.15 -1.7 752,647 + Shewana3_0638 0.19 -0.7
Or see this region's nucleotide sequence