Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0636

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0635 and Shewana3_0636 are separated by 254 nucleotidesShewana3_0636 and Shewana3_0637 overlap by 4 nucleotidesShewana3_0637 and Shewana3_0638 are separated by 224 nucleotides Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138 _0634 Shewana3_0635: Shewana3_0635 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 748,128 to 748,883 _0635 Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126 _0636 Shewana3_0637: Shewana3_0637 - two component LuxR family transcriptional regulator (RefSeq), at 751,123 to 751,734 _0637 Shewana3_0638: Shewana3_0638 - smc-like chromosome partitioning protein (DUF3584) (from data), at 751,959 to 755,630 _0638 Position (kb) 749 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1at 748.258 kb on + strand, within Shewana3_0635at 748.485 kb on - strand, within Shewana3_0635at 748.595 kb on + strand, within Shewana3_0635at 748.595 kb on + strand, within Shewana3_0635at 748.603 kb on - strand, within Shewana3_0635at 748.710 kb on - strand, within Shewana3_0635at 748.722 kb on - strand, within Shewana3_0635at 748.797 kb on + strand, within Shewana3_0635at 748.860 kb on + strandat 748.944 kb on + strandat 748.987 kb on - strandat 749.020 kb on + strandat 749.125 kb on + strandat 749.133 kb on - strandat 749.149 kb on + strandat 749.149 kb on + strandat 749.250 kb on + strandat 749.297 kb on + strandat 749.405 kb on + strand, within Shewana3_0636at 749.427 kb on - strand, within Shewana3_0636at 749.454 kb on + strand, within Shewana3_0636at 749.454 kb on + strand, within Shewana3_0636at 749.462 kb on - strand, within Shewana3_0636at 749.503 kb on - strand, within Shewana3_0636at 749.545 kb on - strand, within Shewana3_0636at 749.554 kb on + strand, within Shewana3_0636at 749.599 kb on + strand, within Shewana3_0636at 749.607 kb on - strand, within Shewana3_0636at 749.655 kb on + strand, within Shewana3_0636at 749.676 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.719 kb on - strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.787 kb on - strand, within Shewana3_0636at 749.787 kb on - strand, within Shewana3_0636at 749.801 kb on + strand, within Shewana3_0636at 749.916 kb on + strand, within Shewana3_0636at 750.090 kb on + strand, within Shewana3_0636at 750.249 kb on + strand, within Shewana3_0636at 750.348 kb on + strand, within Shewana3_0636at 750.348 kb on + strand, within Shewana3_0636at 750.374 kb on - strand, within Shewana3_0636at 750.450 kb on + strand, within Shewana3_0636at 750.518 kb on - strand, within Shewana3_0636at 750.548 kb on + strand, within Shewana3_0636at 750.669 kb on + strand, within Shewana3_0636at 750.687 kb on + strand, within Shewana3_0636at 750.806 kb on + strand, within Shewana3_0636at 750.891 kb on - strand, within Shewana3_0636at 750.915 kb on - strand, within Shewana3_0636at 750.927 kb on + strand, within Shewana3_0636at 750.988 kb on + strandat 750.990 kb on + strandat 751.128 kb on - strandat 751.263 kb on - strand, within Shewana3_0637at 751.324 kb on - strand, within Shewana3_0637at 751.338 kb on + strand, within Shewana3_0637at 751.559 kb on + strand, within Shewana3_0637at 751.567 kb on - strand, within Shewana3_0637at 751.586 kb on + strand, within Shewana3_0637at 751.805 kb on - strandat 751.878 kb on + strandat 751.894 kb on - strandat 751.988 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
748,258 + Shewana3_0635 0.17 +0.4
748,485 - Shewana3_0635 0.47 -0.0
748,595 + Shewana3_0635 0.62 -0.5
748,595 + Shewana3_0635 0.62 -1.3
748,603 - Shewana3_0635 0.63 -0.9
748,710 - Shewana3_0635 0.77 -0.4
748,722 - Shewana3_0635 0.79 -0.6
748,797 + Shewana3_0635 0.88 -1.0
748,860 + -1.8
748,944 + -0.9
748,987 - +0.9
749,020 + -0.1
749,125 + -0.5
749,133 - -0.5
749,149 + -0.8
749,149 + -0.8
749,250 + -1.0
749,297 + -0.1
749,405 + Shewana3_0636 0.13 -0.4
749,427 - Shewana3_0636 0.15 -1.9
749,454 + Shewana3_0636 0.16 -1.2
749,454 + Shewana3_0636 0.16 -0.3
749,462 - Shewana3_0636 0.16 -0.7
749,503 - Shewana3_0636 0.18 -0.7
749,545 - Shewana3_0636 0.20 -1.0
749,554 + Shewana3_0636 0.21 +0.1
749,599 + Shewana3_0636 0.23 -1.9
749,607 - Shewana3_0636 0.24 -1.9
749,655 + Shewana3_0636 0.26 -0.1
749,676 - Shewana3_0636 0.27 -1.5
749,695 - Shewana3_0636 0.28 +0.7
749,695 - Shewana3_0636 0.28 -1.6
749,695 - Shewana3_0636 0.28 -1.3
749,719 - Shewana3_0636 0.29 -0.2
749,779 + Shewana3_0636 0.32 -0.1
749,779 + Shewana3_0636 0.32 -0.2
749,779 + Shewana3_0636 0.32 -0.5
749,779 + Shewana3_0636 0.32 -0.1
749,779 + Shewana3_0636 0.32 -0.1
749,787 - Shewana3_0636 0.33 -3.0
749,787 - Shewana3_0636 0.33 -2.6
749,801 + Shewana3_0636 0.33 -0.7
749,916 + Shewana3_0636 0.39 -0.2
750,090 + Shewana3_0636 0.48 +0.4
750,249 + Shewana3_0636 0.56 +0.0
750,348 + Shewana3_0636 0.61 -0.1
750,348 + Shewana3_0636 0.61 -1.1
750,374 - Shewana3_0636 0.62 -0.5
750,450 + Shewana3_0636 0.66 -0.5
750,518 - Shewana3_0636 0.69 +0.1
750,548 + Shewana3_0636 0.71 +0.6
750,669 + Shewana3_0636 0.77 -0.1
750,687 + Shewana3_0636 0.78 -0.3
750,806 + Shewana3_0636 0.84 +0.7
750,891 - Shewana3_0636 0.88 -0.9
750,915 - Shewana3_0636 0.89 -0.2
750,927 + Shewana3_0636 0.90 +0.7
750,988 + +0.6
750,990 + -0.1
751,128 - +0.3
751,263 - Shewana3_0637 0.23 +0.1
751,324 - Shewana3_0637 0.33 -0.5
751,338 + Shewana3_0637 0.35 +0.4
751,559 + Shewana3_0637 0.71 -0.3
751,567 - Shewana3_0637 0.73 -1.3
751,586 + Shewana3_0637 0.76 -0.1
751,805 - -0.8
751,878 + +0.5
751,894 - -0.1
751,988 - -0.7

Or see this region's nucleotide sequence