Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0618 and Shewana3_0619 are separated by 120 nucleotides Shewana3_0619 and Shewana3_0620 are separated by 170 nucleotides Shewana3_0620 and Shewana3_0621 are separated by 205 nucleotides Shewana3_0621 and Shewana3_0622 are separated by 171 nucleotides
Shewana3_0618: Shewana3_0618 - Sel1 domain-containing protein (RefSeq), at 723,289 to 724,068
_0618
Shewana3_0619: Shewana3_0619 - 2'-5' RNA ligase (RefSeq), at 724,189 to 724,761
_0619
Shewana3_0620: Shewana3_0620 - diguanylate cyclase/phosphodiesterase (RefSeq), at 724,932 to 727,118
_0620
Shewana3_0621: Shewana3_0621 - hypothetical protein (RefSeq), at 727,324 to 727,881
_0621
Shewana3_0622: Shewana3_0622 - ATP-dependent helicase HrpB (RefSeq), at 728,053 to 730,560
_0622
Position (kb) 724
725
726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 724.180 kb on + strand at 724.266 kb on + strand, within Shewana3_0619 at 724.266 kb on + strand, within Shewana3_0619 at 724.291 kb on + strand, within Shewana3_0619 at 724.326 kb on + strand, within Shewana3_0619 at 724.334 kb on - strand, within Shewana3_0619 at 724.334 kb on - strand, within Shewana3_0619 at 724.441 kb on - strand, within Shewana3_0619 at 724.517 kb on - strand, within Shewana3_0619 at 724.724 kb on - strand at 724.738 kb on + strand at 725.041 kb on - strand at 725.088 kb on + strand at 725.089 kb on + strand at 725.091 kb on - strand at 725.203 kb on + strand, within Shewana3_0620 at 725.211 kb on - strand, within Shewana3_0620 at 725.211 kb on - strand, within Shewana3_0620 at 725.229 kb on + strand, within Shewana3_0620 at 725.249 kb on + strand, within Shewana3_0620 at 725.356 kb on + strand, within Shewana3_0620 at 725.433 kb on + strand, within Shewana3_0620 at 725.457 kb on + strand, within Shewana3_0620 at 725.502 kb on + strand, within Shewana3_0620 at 725.502 kb on + strand, within Shewana3_0620 at 725.510 kb on - strand, within Shewana3_0620 at 725.619 kb on + strand, within Shewana3_0620 at 725.678 kb on - strand, within Shewana3_0620 at 725.678 kb on - strand, within Shewana3_0620 at 725.693 kb on - strand, within Shewana3_0620 at 725.769 kb on - strand, within Shewana3_0620 at 725.847 kb on + strand, within Shewana3_0620 at 726.118 kb on - strand, within Shewana3_0620 at 726.235 kb on - strand, within Shewana3_0620 at 726.252 kb on + strand, within Shewana3_0620 at 726.275 kb on + strand, within Shewana3_0620 at 726.283 kb on - strand, within Shewana3_0620 at 726.297 kb on + strand, within Shewana3_0620 at 726.307 kb on - strand, within Shewana3_0620 at 726.468 kb on + strand, within Shewana3_0620 at 726.530 kb on - strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.547 kb on + strand, within Shewana3_0620 at 726.672 kb on + strand, within Shewana3_0620 at 726.721 kb on - strand, within Shewana3_0620 at 726.929 kb on - strand at 726.967 kb on + strand at 727.071 kb on - strand at 727.087 kb on - strand at 727.088 kb on - strand at 727.088 kb on - strand at 727.095 kb on - strand at 727.410 kb on - strand, within Shewana3_0621 at 727.504 kb on - strand, within Shewana3_0621 at 727.627 kb on + strand, within Shewana3_0621 at 727.637 kb on - strand, within Shewana3_0621 at 727.659 kb on - strand, within Shewana3_0621 at 727.814 kb on - strand, within Shewana3_0621 at 727.864 kb on - strand at 727.999 kb on + strand at 727.999 kb on + strand at 728.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 724,180 + -0.5 724,266 + Shewana3_0619 0.13 -0.5 724,266 + Shewana3_0619 0.13 +0.2 724,291 + Shewana3_0619 0.18 -0.0 724,326 + Shewana3_0619 0.24 -0.5 724,334 - Shewana3_0619 0.25 +0.5 724,334 - Shewana3_0619 0.25 +0.4 724,441 - Shewana3_0619 0.44 -0.0 724,517 - Shewana3_0619 0.57 +0.4 724,724 - +0.1 724,738 + -1.1 725,041 - -0.7 725,088 + -1.9 725,089 + -1.5 725,091 - -0.0 725,203 + Shewana3_0620 0.12 +0.0 725,211 - Shewana3_0620 0.13 +0.7 725,211 - Shewana3_0620 0.13 +0.8 725,229 + Shewana3_0620 0.14 -0.0 725,249 + Shewana3_0620 0.14 +0.5 725,356 + Shewana3_0620 0.19 +1.5 725,433 + Shewana3_0620 0.23 +0.5 725,457 + Shewana3_0620 0.24 -0.2 725,502 + Shewana3_0620 0.26 +0.4 725,502 + Shewana3_0620 0.26 +0.3 725,510 - Shewana3_0620 0.26 -1.2 725,619 + Shewana3_0620 0.31 +0.2 725,678 - Shewana3_0620 0.34 +0.4 725,678 - Shewana3_0620 0.34 +0.2 725,693 - Shewana3_0620 0.35 -0.2 725,769 - Shewana3_0620 0.38 -1.6 725,847 + Shewana3_0620 0.42 +0.4 726,118 - Shewana3_0620 0.54 -1.0 726,235 - Shewana3_0620 0.60 -3.2 726,252 + Shewana3_0620 0.60 +0.4 726,275 + Shewana3_0620 0.61 -1.3 726,283 - Shewana3_0620 0.62 -1.3 726,297 + Shewana3_0620 0.62 -1.1 726,307 - Shewana3_0620 0.63 -0.6 726,468 + Shewana3_0620 0.70 -0.3 726,530 - Shewana3_0620 0.73 +0.2 726,547 + Shewana3_0620 0.74 -1.0 726,547 + Shewana3_0620 0.74 +0.0 726,672 + Shewana3_0620 0.80 -0.0 726,721 - Shewana3_0620 0.82 -2.5 726,929 - -0.0 726,967 + -1.6 727,071 - +0.4 727,087 - -0.2 727,088 - -1.6 727,088 - -0.3 727,095 - -1.2 727,410 - Shewana3_0621 0.15 +0.8 727,504 - Shewana3_0621 0.32 -1.0 727,627 + Shewana3_0621 0.54 -0.0 727,637 - Shewana3_0621 0.56 -1.8 727,659 - Shewana3_0621 0.60 -0.6 727,814 - Shewana3_0621 0.88 -0.4 727,864 - +0.2 727,999 + -0.6 727,999 + -0.6 728,007 - +0.5
Or see this region's nucleotide sequence