Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0603 and sspA are separated by 96 nucleotides sspA and Shewana3_0605 overlap by 1 nucleotides Shewana3_0605 and Shewana3_0606 are separated by 155 nucleotides
Shewana3_0603: Shewana3_0603 - cytochrome c1 (RefSeq), at 706,727 to 707,425
_0603
Shewana3_0604: sspA - stringent starvation protein A (RefSeq), at 707,522 to 708,151
sspA
Shewana3_0605: Shewana3_0605 - ClpXP protease specificity-enhancing factor (RefSeq), at 708,151 to 708,588
_0605
Shewana3_0606: Shewana3_0606 - aminodeoxychorismate synthase, glutamine amidotransferase subunit (RefSeq), at 708,744 to 709,319
_0606
Position (kb) 708
709 Strain fitness (log2 ratio) -1
0
1 at 707.202 kb on + strand, within Shewana3_0603 at 707.414 kb on + strand at 707.506 kb on + strand at 707.728 kb on + strand, within sspA at 708.451 kb on + strand, within Shewana3_0605 at 708.603 kb on + strand at 708.678 kb on - strand at 708.810 kb on + strand, within Shewana3_0606 at 708.900 kb on - strand, within Shewana3_0606 at 709.085 kb on + strand, within Shewana3_0606 at 709.343 kb on + strand at 709.351 kb on - strand at 709.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 707,202 + Shewana3_0603 0.68 -1.2 707,414 + +1.0 707,506 + -0.9 707,728 + sspA Shewana3_0604 0.33 +0.2 708,451 + Shewana3_0605 0.68 +1.0 708,603 + -0.3 708,678 - +0.3 708,810 + Shewana3_0606 0.11 +0.9 708,900 - Shewana3_0606 0.27 -0.0 709,085 + Shewana3_0606 0.59 +0.1 709,343 + +0.2 709,351 - -0.5 709,499 + +0.1
Or see this region's nucleotide sequence