Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0558

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0557 and Shewana3_0558 are separated by 364 nucleotidesShewana3_0558 and Shewana3_0559 are separated by 54 nucleotides Shewana3_0557: Shewana3_0557 - methyltransferase type 11 (RefSeq), at 649,989 to 650,774 _0557 Shewana3_0558: Shewana3_0558 - dehydratase (RefSeq), at 651,139 to 652,002 _0558 Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947 _0559 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1at 650.161 kb on - strand, within Shewana3_0557at 650.263 kb on - strand, within Shewana3_0557at 650.263 kb on - strand, within Shewana3_0557at 650.355 kb on - strand, within Shewana3_0557at 650.577 kb on + strand, within Shewana3_0557at 650.585 kb on - strand, within Shewana3_0557at 650.719 kb on + strandat 650.784 kb on - strandat 650.786 kb on + strandat 650.978 kb on + strandat 650.978 kb on + strandat 650.980 kb on - strandat 650.986 kb on - strandat 651.136 kb on + strandat 651.191 kb on - strandat 651.237 kb on - strand, within Shewana3_0558at 651.240 kb on - strand, within Shewana3_0558at 651.339 kb on + strand, within Shewana3_0558at 651.728 kb on + strand, within Shewana3_0558at 651.767 kb on - strand, within Shewana3_0558at 651.811 kb on - strand, within Shewana3_0558at 651.818 kb on + strand, within Shewana3_0558at 651.940 kb on + strandat 652.004 kb on - strandat 652.062 kb on - strandat 652.110 kb on + strandat 652.260 kb on + strand, within Shewana3_0559at 652.317 kb on - strand, within Shewana3_0559at 652.345 kb on - strand, within Shewana3_0559at 652.345 kb on - strand, within Shewana3_0559at 652.360 kb on - strand, within Shewana3_0559at 652.506 kb on - strand, within Shewana3_0559at 652.626 kb on + strand, within Shewana3_0559at 652.668 kb on + strand, within Shewana3_0559at 652.676 kb on - strand, within Shewana3_0559at 652.836 kb on + strand, within Shewana3_0559at 652.836 kb on + strand, within Shewana3_0559at 652.856 kb on + strand, within Shewana3_0559

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
650,161 - Shewana3_0557 0.22 +0.3
650,263 - Shewana3_0557 0.35 -0.1
650,263 - Shewana3_0557 0.35 +0.7
650,355 - Shewana3_0557 0.47 +0.4
650,577 + Shewana3_0557 0.75 -1.9
650,585 - Shewana3_0557 0.76 +0.9
650,719 + -1.3
650,784 - +1.0
650,786 + -1.6
650,978 + +0.4
650,978 + -0.8
650,980 - -1.8
650,986 - -2.2
651,136 + -1.3
651,191 - +0.7
651,237 - Shewana3_0558 0.11 -0.3
651,240 - Shewana3_0558 0.12 -0.9
651,339 + Shewana3_0558 0.23 -1.1
651,728 + Shewana3_0558 0.68 -1.3
651,767 - Shewana3_0558 0.73 -0.6
651,811 - Shewana3_0558 0.78 -2.5
651,818 + Shewana3_0558 0.79 -1.6
651,940 + -1.8
652,004 - -0.4
652,062 - +0.4
652,110 + -0.3
652,260 + Shewana3_0559 0.23 +0.7
652,317 - Shewana3_0559 0.29 -1.2
652,345 - Shewana3_0559 0.32 +0.5
652,345 - Shewana3_0559 0.32 -0.6
652,360 - Shewana3_0559 0.34 +1.1
652,506 - Shewana3_0559 0.50 +0.1
652,626 + Shewana3_0559 0.64 -1.1
652,668 + Shewana3_0559 0.69 +0.5
652,676 - Shewana3_0559 0.69 -0.1
652,836 + Shewana3_0559 0.87 -0.3
652,836 + Shewana3_0559 0.87 -0.7
652,856 + Shewana3_0559 0.90 +0.5

Or see this region's nucleotide sequence