Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0557 and Shewana3_0558 are separated by 364 nucleotides Shewana3_0558 and Shewana3_0559 are separated by 54 nucleotides
Shewana3_0557: Shewana3_0557 - methyltransferase type 11 (RefSeq), at 649,989 to 650,774
_0557
Shewana3_0558: Shewana3_0558 - dehydratase (RefSeq), at 651,139 to 652,002
_0558
Shewana3_0559: Shewana3_0559 - aldo/keto reductase (RefSeq), at 652,057 to 652,947
_0559
Position (kb)
651
652
653 Strain fitness (log2 ratio)
-2
-1
0
1 at 650.161 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.355 kb on - strand, within Shewana3_0557 at 650.577 kb on + strand, within Shewana3_0557 at 650.585 kb on - strand, within Shewana3_0557 at 650.719 kb on + strand at 650.784 kb on - strand at 650.786 kb on + strand at 650.978 kb on + strand at 650.978 kb on + strand at 650.980 kb on - strand at 650.986 kb on - strand at 651.136 kb on + strand at 651.191 kb on - strand at 651.237 kb on - strand, within Shewana3_0558 at 651.240 kb on - strand, within Shewana3_0558 at 651.339 kb on + strand, within Shewana3_0558 at 651.728 kb on + strand, within Shewana3_0558 at 651.767 kb on - strand, within Shewana3_0558 at 651.811 kb on - strand, within Shewana3_0558 at 651.818 kb on + strand, within Shewana3_0558 at 651.940 kb on + strand at 652.004 kb on - strand at 652.062 kb on - strand at 652.110 kb on + strand at 652.260 kb on + strand, within Shewana3_0559 at 652.317 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.345 kb on - strand, within Shewana3_0559 at 652.360 kb on - strand, within Shewana3_0559 at 652.506 kb on - strand, within Shewana3_0559 at 652.626 kb on + strand, within Shewana3_0559 at 652.668 kb on + strand, within Shewana3_0559 at 652.676 kb on - strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.836 kb on + strand, within Shewana3_0559 at 652.856 kb on + strand, within Shewana3_0559
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 650,161 - Shewana3_0557 0.22 +0.3 650,263 - Shewana3_0557 0.35 -0.1 650,263 - Shewana3_0557 0.35 +0.7 650,355 - Shewana3_0557 0.47 +0.4 650,577 + Shewana3_0557 0.75 -1.9 650,585 - Shewana3_0557 0.76 +0.9 650,719 + -1.3 650,784 - +1.0 650,786 + -1.6 650,978 + +0.4 650,978 + -0.8 650,980 - -1.8 650,986 - -2.2 651,136 + -1.3 651,191 - +0.7 651,237 - Shewana3_0558 0.11 -0.3 651,240 - Shewana3_0558 0.12 -0.9 651,339 + Shewana3_0558 0.23 -1.1 651,728 + Shewana3_0558 0.68 -1.3 651,767 - Shewana3_0558 0.73 -0.6 651,811 - Shewana3_0558 0.78 -2.5 651,818 + Shewana3_0558 0.79 -1.6 651,940 + -1.8 652,004 - -0.4 652,062 - +0.4 652,110 + -0.3 652,260 + Shewana3_0559 0.23 +0.7 652,317 - Shewana3_0559 0.29 -1.2 652,345 - Shewana3_0559 0.32 +0.5 652,345 - Shewana3_0559 0.32 -0.6 652,360 - Shewana3_0559 0.34 +1.1 652,506 - Shewana3_0559 0.50 +0.1 652,626 + Shewana3_0559 0.64 -1.1 652,668 + Shewana3_0559 0.69 +0.5 652,676 - Shewana3_0559 0.69 -0.1 652,836 + Shewana3_0559 0.87 -0.3 652,836 + Shewana3_0559 0.87 -0.7 652,856 + Shewana3_0559 0.90 +0.5
Or see this region's nucleotide sequence