Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0556 and Shewana3_0557 are separated by 142 nucleotides Shewana3_0557 and Shewana3_0558 are separated by 364 nucleotides
Shewana3_0556: Shewana3_0556 - GumN family protein (RefSeq), at 648,950 to 649,846
_0556
Shewana3_0557: Shewana3_0557 - methyltransferase type 11 (RefSeq), at 649,989 to 650,774
_0557
Shewana3_0558: Shewana3_0558 - dehydratase (RefSeq), at 651,139 to 652,002
_0558
Position (kb) 649
650
651 Strain fitness (log2 ratio) -2
-1
0
1 at 649.015 kb on + strand at 649.053 kb on - strand, within Shewana3_0556 at 649.172 kb on - strand, within Shewana3_0556 at 649.308 kb on + strand, within Shewana3_0556 at 649.328 kb on + strand, within Shewana3_0556 at 649.423 kb on - strand, within Shewana3_0556 at 649.438 kb on + strand, within Shewana3_0556 at 649.481 kb on + strand, within Shewana3_0556 at 649.515 kb on + strand, within Shewana3_0556 at 649.567 kb on + strand, within Shewana3_0556 at 649.654 kb on + strand, within Shewana3_0556 at 649.841 kb on + strand at 649.920 kb on - strand at 650.075 kb on - strand, within Shewana3_0557 at 650.161 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.263 kb on - strand, within Shewana3_0557 at 650.355 kb on - strand, within Shewana3_0557 at 650.577 kb on + strand, within Shewana3_0557 at 650.585 kb on - strand, within Shewana3_0557 at 650.719 kb on + strand at 650.784 kb on - strand at 650.786 kb on + strand at 650.978 kb on + strand at 650.978 kb on + strand at 650.980 kb on - strand at 650.986 kb on - strand at 651.136 kb on + strand at 651.191 kb on - strand at 651.237 kb on - strand, within Shewana3_0558 at 651.240 kb on - strand, within Shewana3_0558 at 651.339 kb on + strand, within Shewana3_0558 at 651.728 kb on + strand, within Shewana3_0558 at 651.767 kb on - strand, within Shewana3_0558
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 649,015 + +0.9 649,053 - Shewana3_0556 0.11 -2.2 649,172 - Shewana3_0556 0.25 -0.1 649,308 + Shewana3_0556 0.40 -0.0 649,328 + Shewana3_0556 0.42 +0.6 649,423 - Shewana3_0556 0.53 -1.7 649,438 + Shewana3_0556 0.54 +0.4 649,481 + Shewana3_0556 0.59 -0.0 649,515 + Shewana3_0556 0.63 +0.5 649,567 + Shewana3_0556 0.69 +0.9 649,654 + Shewana3_0556 0.78 +0.3 649,841 + +0.5 649,920 - -1.8 650,075 - Shewana3_0557 0.11 +0.9 650,161 - Shewana3_0557 0.22 +0.3 650,263 - Shewana3_0557 0.35 -0.1 650,263 - Shewana3_0557 0.35 +0.7 650,355 - Shewana3_0557 0.47 +0.4 650,577 + Shewana3_0557 0.75 -1.9 650,585 - Shewana3_0557 0.76 +0.9 650,719 + -1.3 650,784 - +1.0 650,786 + -1.6 650,978 + +0.4 650,978 + -0.8 650,980 - -1.8 650,986 - -2.2 651,136 + -1.3 651,191 - +0.7 651,237 - Shewana3_0558 0.11 -0.3 651,240 - Shewana3_0558 0.12 -0.9 651,339 + Shewana3_0558 0.23 -1.1 651,728 + Shewana3_0558 0.68 -1.3 651,767 - Shewana3_0558 0.73 -0.6
Or see this region's nucleotide sequence