Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0552 and Shewana3_0553 are separated by 272 nucleotides Shewana3_0553 and Shewana3_0554 are separated by 15 nucleotides Shewana3_0554 and Shewana3_0555 are separated by 138 nucleotides Shewana3_0555 and Shewana3_0556 are separated by 48 nucleotides
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Shewana3_0553: Shewana3_0553 - hypothetical protein (RefSeq), at 646,160 to 646,684
_0553
Shewana3_0554: Shewana3_0554 - diguanylate cyclase/phosphodiesterase (RefSeq), at 646,700 to 648,454
_0554
Shewana3_0555: Shewana3_0555 - hypothetical protein (RefSeq), at 648,593 to 648,901
_0555
Shewana3_0556: Shewana3_0556 - GumN family protein (RefSeq), at 648,950 to 649,846
_0556
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552 at 646.198 kb on - strand at 646.203 kb on + strand at 646.508 kb on + strand, within Shewana3_0553 at 646.935 kb on - strand, within Shewana3_0554 at 647.190 kb on + strand, within Shewana3_0554 at 647.742 kb on - strand, within Shewana3_0554 at 647.768 kb on + strand, within Shewana3_0554 at 648.138 kb on - strand, within Shewana3_0554 at 648.156 kb on - strand, within Shewana3_0554 at 648.282 kb on + strand at 648.290 kb on - strand at 648.325 kb on - strand at 648.340 kb on + strand at 648.425 kb on - strand at 648.477 kb on - strand at 648.654 kb on - strand, within Shewana3_0555 at 648.678 kb on - strand, within Shewana3_0555 at 648.678 kb on - strand, within Shewana3_0555 at 648.761 kb on - strand, within Shewana3_0555 at 648.763 kb on + strand, within Shewana3_0555 at 648.893 kb on - strand at 648.893 kb on - strand at 648.893 kb on - strand at 648.893 kb on - strand at 648.938 kb on - strand at 649.015 kb on + strand at 649.053 kb on - strand, within Shewana3_0556 at 649.172 kb on - strand, within Shewana3_0556 at 649.308 kb on + strand, within Shewana3_0556 at 649.328 kb on + strand, within Shewana3_0556 at 649.423 kb on - strand, within Shewana3_0556 at 649.438 kb on + strand, within Shewana3_0556
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 645,707 + Shewana3_0552 0.41 -0.4 645,707 + Shewana3_0552 0.41 +0.6 645,715 - Shewana3_0552 0.44 -1.2 646,198 - -0.9 646,203 + +0.5 646,508 + Shewana3_0553 0.66 +0.8 646,935 - Shewana3_0554 0.13 +0.6 647,190 + Shewana3_0554 0.28 -1.2 647,742 - Shewana3_0554 0.59 -3.3 647,768 + Shewana3_0554 0.61 -1.6 648,138 - Shewana3_0554 0.82 -1.3 648,156 - Shewana3_0554 0.83 -0.4 648,282 + +0.3 648,290 - -1.2 648,325 - -1.2 648,340 + +0.7 648,425 - +0.1 648,477 - -0.2 648,654 - Shewana3_0555 0.20 +0.6 648,678 - Shewana3_0555 0.28 +0.7 648,678 - Shewana3_0555 0.28 +0.4 648,761 - Shewana3_0555 0.54 +0.8 648,763 + Shewana3_0555 0.55 -0.3 648,893 - +0.1 648,893 - +0.1 648,893 - -0.5 648,893 - +0.6 648,938 - -0.4 649,015 + +0.9 649,053 - Shewana3_0556 0.11 -2.2 649,172 - Shewana3_0556 0.25 -0.1 649,308 + Shewana3_0556 0.40 -0.0 649,328 + Shewana3_0556 0.42 +0.6 649,423 - Shewana3_0556 0.53 -1.7 649,438 + Shewana3_0556 0.54 +0.4
Or see this region's nucleotide sequence