Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0540 and Shewana3_0541 are separated by 104 nucleotides Shewana3_0541 and Shewana3_0542 are separated by 315 nucleotides
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Shewana3_0541: Shewana3_0541 - hypothetical protein (RefSeq), at 635,873 to 636,049
_0541
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1 at 635.285 kb on + strand, within Shewana3_0540 at 635.354 kb on + strand, within Shewana3_0540 at 635.667 kb on - strand, within Shewana3_0540 at 635.854 kb on + strand at 635.879 kb on - strand at 635.952 kb on + strand, within Shewana3_0541 at 636.221 kb on - strand at 636.370 kb on - strand at 636.481 kb on + strand at 636.489 kb on - strand at 636.489 kb on - strand at 636.491 kb on - strand at 636.712 kb on - strand, within Shewana3_0542 at 636.761 kb on + strand, within Shewana3_0542 at 636.769 kb on - strand, within Shewana3_0542 at 636.783 kb on + strand, within Shewana3_0542 at 636.784 kb on + strand, within Shewana3_0542 at 636.851 kb on - strand, within Shewana3_0542
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 635,285 + Shewana3_0540 0.50 +0.6 635,354 + Shewana3_0540 0.57 +0.6 635,667 - Shewana3_0540 0.89 -1.9 635,854 + -0.2 635,879 - +0.1 635,952 + Shewana3_0541 0.45 -2.4 636,221 - +0.5 636,370 - -1.1 636,481 + +0.0 636,489 - -1.7 636,489 - -1.4 636,491 - -1.3 636,712 - Shewana3_0542 0.16 +0.4 636,761 + Shewana3_0542 0.18 -0.3 636,769 - Shewana3_0542 0.19 -0.4 636,783 + Shewana3_0542 0.19 -0.3 636,784 + Shewana3_0542 0.19 +0.9 636,851 - Shewana3_0542 0.23 -1.3
Or see this region's nucleotide sequence