Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0539 and Shewana3_0540 are separated by 280 nucleotides Shewana3_0540 and Shewana3_0541 are separated by 104 nucleotides Shewana3_0541 and Shewana3_0542 are separated by 315 nucleotides
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Shewana3_0540: Shewana3_0540 - hypothetical protein (RefSeq), at 634,806 to 635,768
_0540
Shewana3_0541: Shewana3_0541 - hypothetical protein (RefSeq), at 635,873 to 636,049
_0541
Shewana3_0542: Shewana3_0542 - multi-sensor signal transduction histidine kinase (RefSeq), at 636,365 to 638,524
_0542
Position (kb) 634
635
636 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 633.846 kb on - strand, within Shewana3_0539 at 633.896 kb on - strand, within Shewana3_0539 at 633.925 kb on - strand, within Shewana3_0539 at 634.078 kb on + strand, within Shewana3_0539 at 634.105 kb on + strand, within Shewana3_0539 at 634.113 kb on - strand, within Shewana3_0539 at 634.154 kb on - strand, within Shewana3_0539 at 634.156 kb on - strand, within Shewana3_0539 at 634.204 kb on - strand, within Shewana3_0539 at 634.609 kb on - strand at 635.285 kb on + strand, within Shewana3_0540 at 635.354 kb on + strand, within Shewana3_0540 at 635.667 kb on - strand, within Shewana3_0540 at 635.854 kb on + strand at 635.879 kb on - strand at 635.952 kb on + strand, within Shewana3_0541 at 636.221 kb on - strand at 636.370 kb on - strand at 636.481 kb on + strand at 636.489 kb on - strand at 636.489 kb on - strand at 636.491 kb on - strand at 636.712 kb on - strand, within Shewana3_0542 at 636.761 kb on + strand, within Shewana3_0542
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 633,846 - Shewana3_0539 0.50 +0.5 633,896 - Shewana3_0539 0.54 -0.1 633,925 - Shewana3_0539 0.56 +0.9 634,078 + Shewana3_0539 0.67 -0.7 634,105 + Shewana3_0539 0.69 -0.8 634,113 - Shewana3_0539 0.70 -0.4 634,154 - Shewana3_0539 0.73 -3.0 634,156 - Shewana3_0539 0.73 -1.2 634,204 - Shewana3_0539 0.76 +0.5 634,609 - -0.9 635,285 + Shewana3_0540 0.50 +0.6 635,354 + Shewana3_0540 0.57 +0.6 635,667 - Shewana3_0540 0.89 -1.9 635,854 + -0.2 635,879 - +0.1 635,952 + Shewana3_0541 0.45 -2.4 636,221 - +0.5 636,370 - -1.1 636,481 + +0.0 636,489 - -1.7 636,489 - -1.4 636,491 - -1.3 636,712 - Shewana3_0542 0.16 +0.4 636,761 + Shewana3_0542 0.18 -0.3
Or see this region's nucleotide sequence