Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0537 and Shewana3_0538 are separated by 81 nucleotides Shewana3_0538 and Shewana3_0539 are separated by 67 nucleotides
Shewana3_0537: Shewana3_0537 - aspartate kinase (RefSeq), at 631,159 to 632,601
_0537
Shewana3_0538: Shewana3_0538 - hypothetical protein (RefSeq), at 632,683 to 633,102
_0538
Shewana3_0539: Shewana3_0539 - hypothetical protein (RefSeq), at 633,170 to 634,525
_0539
Position (kb)
632
633
634 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 631.877 kb on - strand, within Shewana3_0537 at 632.000 kb on + strand, within Shewana3_0537 at 632.131 kb on + strand, within Shewana3_0537 at 632.139 kb on - strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.196 kb on + strand, within Shewana3_0537 at 632.204 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.320 kb on - strand, within Shewana3_0537 at 632.350 kb on - strand, within Shewana3_0537 at 632.412 kb on - strand, within Shewana3_0537 at 632.672 kb on - strand at 632.674 kb on + strand at 632.780 kb on + strand, within Shewana3_0538 at 632.853 kb on + strand, within Shewana3_0538 at 632.861 kb on + strand, within Shewana3_0538 at 632.901 kb on - strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.039 kb on + strand, within Shewana3_0538 at 633.158 kb on - strand at 633.208 kb on + strand at 633.208 kb on + strand at 633.209 kb on + strand at 633.209 kb on + strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.216 kb on - strand at 633.217 kb on - strand at 633.220 kb on + strand at 633.220 kb on + strand at 633.356 kb on + strand, within Shewana3_0539 at 633.399 kb on + strand, within Shewana3_0539 at 633.405 kb on - strand, within Shewana3_0539 at 633.444 kb on - strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.503 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.543 kb on + strand, within Shewana3_0539 at 633.747 kb on - strand, within Shewana3_0539 at 633.795 kb on + strand, within Shewana3_0539 at 633.846 kb on - strand, within Shewana3_0539 at 633.896 kb on - strand, within Shewana3_0539 at 633.925 kb on - strand, within Shewana3_0539 at 634.078 kb on + strand, within Shewana3_0539
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 631,877 - Shewana3_0537 0.50 -1.9 632,000 + Shewana3_0537 0.58 -0.1 632,131 + Shewana3_0537 0.67 +0.2 632,139 - Shewana3_0537 0.68 -0.5 632,196 + Shewana3_0537 0.72 +0.6 632,196 + Shewana3_0537 0.72 -0.2 632,196 + Shewana3_0537 0.72 +0.2 632,204 - Shewana3_0537 0.72 -0.4 632,320 - Shewana3_0537 0.80 -1.6 632,320 - Shewana3_0537 0.80 -1.9 632,350 - Shewana3_0537 0.83 -1.8 632,412 - Shewana3_0537 0.87 -1.5 632,672 - -0.5 632,674 + +0.2 632,780 + Shewana3_0538 0.23 +0.7 632,853 + Shewana3_0538 0.40 +0.6 632,861 + Shewana3_0538 0.42 +0.4 632,901 - Shewana3_0538 0.52 -0.9 633,039 + Shewana3_0538 0.85 +0.5 633,039 + Shewana3_0538 0.85 +0.4 633,039 + Shewana3_0538 0.85 +0.7 633,039 + Shewana3_0538 0.85 +0.7 633,039 + Shewana3_0538 0.85 +0.4 633,158 - +0.7 633,208 + -0.6 633,208 + +0.9 633,209 + +0.1 633,209 + -0.5 633,216 - +0.6 633,216 - +0.6 633,216 - +0.8 633,217 - -0.3 633,220 + -0.5 633,220 + -0.4 633,356 + Shewana3_0539 0.14 -0.3 633,399 + Shewana3_0539 0.17 -3.8 633,405 - Shewana3_0539 0.17 -0.3 633,444 - Shewana3_0539 0.20 +0.5 633,503 + Shewana3_0539 0.25 -2.0 633,503 + Shewana3_0539 0.25 -1.6 633,543 + Shewana3_0539 0.28 -0.7 633,543 + Shewana3_0539 0.28 -1.0 633,747 - Shewana3_0539 0.43 -0.1 633,795 + Shewana3_0539 0.46 -0.3 633,846 - Shewana3_0539 0.50 +0.5 633,896 - Shewana3_0539 0.54 -0.1 633,925 - Shewana3_0539 0.56 +0.9 634,078 + Shewana3_0539 0.67 -0.7
Or see this region's nucleotide sequence