Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0527

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0526 and Shewana3_0527 are separated by 250 nucleotidesShewana3_0527 and Shewana3_0528 are separated by 60 nucleotides Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280 _0526 Shewana3_0527: Shewana3_0527 - hypothetical protein (RefSeq), at 618,531 to 620,195 _0527 Shewana3_0528: Shewana3_0528 - peptidase M11, gametolysin (RefSeq), at 620,256 to 622,217 _0528 Position (kb) 618 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1at 617.553 kb on + strand, within Shewana3_0526at 617.553 kb on + strand, within Shewana3_0526at 617.566 kb on - strand, within Shewana3_0526at 617.631 kb on + strand, within Shewana3_0526at 617.946 kb on + strand, within Shewana3_0526at 617.954 kb on - strand, within Shewana3_0526at 618.105 kb on + strand, within Shewana3_0526at 618.120 kb on + strand, within Shewana3_0526at 618.144 kb on - strandat 618.154 kb on - strandat 618.154 kb on - strandat 618.223 kb on + strandat 618.264 kb on + strandat 618.272 kb on - strandat 618.273 kb on - strandat 618.274 kb on + strandat 618.274 kb on + strandat 618.282 kb on - strandat 618.295 kb on - strandat 618.325 kb on + strandat 618.429 kb on - strandat 618.439 kb on - strandat 618.526 kb on - strandat 618.548 kb on + strandat 618.548 kb on + strandat 618.565 kb on - strandat 618.565 kb on - strandat 618.601 kb on - strandat 618.627 kb on + strandat 618.720 kb on - strand, within Shewana3_0527at 618.720 kb on - strand, within Shewana3_0527at 618.760 kb on + strand, within Shewana3_0527at 619.227 kb on - strand, within Shewana3_0527at 619.370 kb on + strand, within Shewana3_0527at 619.378 kb on - strand, within Shewana3_0527at 619.422 kb on + strand, within Shewana3_0527at 619.444 kb on - strand, within Shewana3_0527at 619.539 kb on + strand, within Shewana3_0527at 619.545 kb on + strand, within Shewana3_0527at 619.601 kb on - strand, within Shewana3_0527at 619.606 kb on - strand, within Shewana3_0527at 619.606 kb on - strand, within Shewana3_0527at 619.608 kb on + strand, within Shewana3_0527at 619.670 kb on - strand, within Shewana3_0527at 619.687 kb on - strand, within Shewana3_0527at 619.691 kb on + strand, within Shewana3_0527at 619.697 kb on + strand, within Shewana3_0527at 619.699 kb on - strand, within Shewana3_0527at 619.699 kb on - strand, within Shewana3_0527at 619.699 kb on - strand, within Shewana3_0527at 619.734 kb on - strand, within Shewana3_0527at 619.734 kb on - strand, within Shewana3_0527at 619.772 kb on + strand, within Shewana3_0527at 619.836 kb on + strand, within Shewana3_0527at 619.913 kb on - strand, within Shewana3_0527at 619.938 kb on + strand, within Shewana3_0527at 619.938 kb on + strand, within Shewana3_0527at 620.086 kb on - strandat 620.147 kb on + strandat 620.270 kb on - strandat 620.336 kb on - strandat 620.364 kb on + strandat 620.523 kb on + strand, within Shewana3_0528at 620.523 kb on + strand, within Shewana3_0528at 620.531 kb on - strand, within Shewana3_0528at 620.581 kb on + strand, within Shewana3_0528at 620.815 kb on + strand, within Shewana3_0528at 621.120 kb on + strand, within Shewana3_0528at 621.137 kb on - strand, within Shewana3_0528

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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617,553 + Shewana3_0526 0.47 +0.1
617,553 + Shewana3_0526 0.47 -0.1
617,566 - Shewana3_0526 0.48 -1.3
617,631 + Shewana3_0526 0.52 +0.6
617,946 + Shewana3_0526 0.75 -0.6
617,954 - Shewana3_0526 0.76 +0.6
618,105 + Shewana3_0526 0.87 -2.2
618,120 + Shewana3_0526 0.88 -1.3
618,144 - -0.3
618,154 - +0.1
618,154 - +0.8
618,223 + -2.9
618,264 + -1.2
618,272 - -0.4
618,273 - -0.0
618,274 + -1.7
618,274 + -0.3
618,282 - +0.4
618,295 - -0.0
618,325 + -1.3
618,429 - +0.1
618,439 - -0.4
618,526 - -0.2
618,548 + -0.8
618,548 + -1.0
618,565 - -1.2
618,565 - -1.3
618,601 - +0.0
618,627 + -1.2
618,720 - Shewana3_0527 0.11 -1.0
618,720 - Shewana3_0527 0.11 -0.3
618,760 + Shewana3_0527 0.14 -0.8
619,227 - Shewana3_0527 0.42 -1.1
619,370 + Shewana3_0527 0.50 +0.8
619,378 - Shewana3_0527 0.51 -1.9
619,422 + Shewana3_0527 0.54 -0.1
619,444 - Shewana3_0527 0.55 +0.3
619,539 + Shewana3_0527 0.61 +0.3
619,545 + Shewana3_0527 0.61 +0.4
619,601 - Shewana3_0527 0.64 -1.1
619,606 - Shewana3_0527 0.65 -1.6
619,606 - Shewana3_0527 0.65 -0.5
619,608 + Shewana3_0527 0.65 -0.7
619,670 - Shewana3_0527 0.68 -1.6
619,687 - Shewana3_0527 0.69 -0.8
619,691 + Shewana3_0527 0.70 +0.0
619,697 + Shewana3_0527 0.70 -0.1
619,699 - Shewana3_0527 0.70 -0.1
619,699 - Shewana3_0527 0.70 -0.4
619,699 - Shewana3_0527 0.70 -2.8
619,734 - Shewana3_0527 0.72 -0.2
619,734 - Shewana3_0527 0.72 -0.2
619,772 + Shewana3_0527 0.75 +0.6
619,836 + Shewana3_0527 0.78 +0.7
619,913 - Shewana3_0527 0.83 -0.2
619,938 + Shewana3_0527 0.85 +0.7
619,938 + Shewana3_0527 0.85 +0.1
620,086 - +0.1
620,147 + +0.5
620,270 - -1.2
620,336 - +0.9
620,364 + +1.4
620,523 + Shewana3_0528 0.14 -0.1
620,523 + Shewana3_0528 0.14 +0.5
620,531 - Shewana3_0528 0.14 +0.5
620,581 + Shewana3_0528 0.17 -2.8
620,815 + Shewana3_0528 0.28 +0.2
621,120 + Shewana3_0528 0.44 -0.4
621,137 - Shewana3_0528 0.45 -0.1

Or see this region's nucleotide sequence