Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0508 and Shewana3_0509 are separated by 86 nucleotides Shewana3_0509 and Shewana3_0510 are separated by 27 nucleotides Shewana3_0510 and Shewana3_0511 are separated by 33 nucleotides Shewana3_0511 and Shewana3_0512 are separated by 101 nucleotides
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708
_0509
Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191
_0510
Shewana3_0511: Shewana3_0511 - 3-dehydroquinate dehydratase (RefSeq), at 602,225 to 602,659
_0511
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Position (kb) 601
602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.753 kb on - strand, within Shewana3_0508 at 600.759 kb on + strand, within Shewana3_0508 at 600.760 kb on + strand, within Shewana3_0508 at 600.768 kb on - strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.787 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.836 kb on + strand at 600.845 kb on - strand at 600.889 kb on + strand at 601.128 kb on + strand, within Shewana3_0509 at 601.193 kb on - strand, within Shewana3_0509 at 601.308 kb on + strand, within Shewana3_0509 at 601.338 kb on - strand, within Shewana3_0509 at 601.426 kb on + strand, within Shewana3_0509 at 601.469 kb on + strand, within Shewana3_0509 at 601.521 kb on + strand, within Shewana3_0509 at 601.686 kb on - strand at 601.878 kb on - strand, within Shewana3_0510 at 601.904 kb on + strand, within Shewana3_0510 at 601.956 kb on + strand, within Shewana3_0510 at 601.964 kb on - strand, within Shewana3_0510 at 601.992 kb on + strand, within Shewana3_0510 at 602.010 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.048 kb on - strand, within Shewana3_0510 at 602.059 kb on - strand, within Shewana3_0510 at 602.270 kb on + strand, within Shewana3_0511 at 602.278 kb on - strand, within Shewana3_0511 at 602.423 kb on - strand, within Shewana3_0511 at 602.434 kb on - strand, within Shewana3_0511 at 602.488 kb on + strand, within Shewana3_0511 at 602.576 kb on + strand, within Shewana3_0511 at 602.584 kb on - strand, within Shewana3_0511 at 602.768 kb on + strand at 602.768 kb on + strand at 602.776 kb on - strand at 602.821 kb on + strand, within Shewana3_0512 at 602.836 kb on + strand, within Shewana3_0512 at 602.931 kb on + strand, within Shewana3_0512 at 602.939 kb on - strand, within Shewana3_0512
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 600,753 - Shewana3_0508 0.84 -1.6 600,759 + Shewana3_0508 0.85 +0.9 600,760 + Shewana3_0508 0.85 +0.9 600,768 - Shewana3_0508 0.85 -2.1 600,784 + Shewana3_0508 0.87 -0.2 600,784 + Shewana3_0508 0.87 +1.0 600,787 - Shewana3_0508 0.87 +0.6 600,792 - Shewana3_0508 0.87 -1.4 600,792 - Shewana3_0508 0.87 -2.9 600,836 + +0.5 600,845 - -3.2 600,889 + +0.8 601,128 + Shewana3_0509 0.14 -0.5 601,193 - Shewana3_0509 0.24 +0.5 601,308 + Shewana3_0509 0.41 +0.3 601,338 - Shewana3_0509 0.45 +0.2 601,426 + Shewana3_0509 0.58 -0.2 601,469 + Shewana3_0509 0.65 -1.8 601,521 + Shewana3_0509 0.72 -0.6 601,686 - +0.6 601,878 - Shewana3_0510 0.31 +0.2 601,904 + Shewana3_0510 0.37 +0.6 601,956 + Shewana3_0510 0.48 -0.1 601,964 - Shewana3_0510 0.50 +0.4 601,992 + Shewana3_0510 0.56 +0.5 602,010 + Shewana3_0510 0.60 -0.1 602,023 + Shewana3_0510 0.63 +0.1 602,023 + Shewana3_0510 0.63 +0.2 602,031 - Shewana3_0510 0.65 +0.1 602,031 - Shewana3_0510 0.65 +0.3 602,048 - Shewana3_0510 0.68 +0.7 602,059 - Shewana3_0510 0.71 +0.0 602,270 + Shewana3_0511 0.10 -0.7 602,278 - Shewana3_0511 0.12 +0.5 602,423 - Shewana3_0511 0.46 -0.1 602,434 - Shewana3_0511 0.48 +0.3 602,488 + Shewana3_0511 0.60 -0.0 602,576 + Shewana3_0511 0.81 -0.2 602,584 - Shewana3_0511 0.83 +0.6 602,768 + +0.1 602,768 + +0.3 602,776 - +0.1 602,821 + Shewana3_0512 0.14 +0.4 602,836 + Shewana3_0512 0.18 -0.2 602,931 + Shewana3_0512 0.41 +0.8 602,939 - Shewana3_0512 0.43 -0.4
Or see this region's nucleotide sequence