Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0490 and Shewana3_0491 are separated by 93 nucleotides Shewana3_0491 and Shewana3_0492 are separated by 64 nucleotides Shewana3_0492 and Shewana3_0493 are separated by 86 nucleotides Shewana3_0493 and Shewana3_0494 are separated by 2 nucleotides
Shewana3_0490: Shewana3_0490 - rhodanese domain-containing protein (RefSeq), at 574,080 to 574,523
_0490
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Shewana3_0493: Shewana3_0493 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 576,222 to 576,929
_0493
Shewana3_0494: Shewana3_0494 - polysulphide reductase, NrfD (RefSeq), at 576,932 to 577,879
_0494
Position (kb) 575
576
577 Strain fitness (log2 ratio) -2
-1
0
1 at 574.555 kb on - strand at 574.670 kb on - strand at 574.723 kb on - strand, within Shewana3_0491 at 574.795 kb on + strand, within Shewana3_0491 at 574.887 kb on + strand, within Shewana3_0491 at 574.895 kb on - strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 575.049 kb on + strand, within Shewana3_0491 at 575.160 kb on - strand, within Shewana3_0491 at 575.175 kb on + strand, within Shewana3_0491 at 575.180 kb on + strand, within Shewana3_0491 at 575.209 kb on + strand, within Shewana3_0491 at 575.265 kb on + strand, within Shewana3_0491 at 575.397 kb on + strand at 575.397 kb on + strand at 575.409 kb on + strand at 575.441 kb on + strand at 575.449 kb on - strand at 575.486 kb on - strand at 575.541 kb on - strand, within Shewana3_0492 at 575.584 kb on - strand, within Shewana3_0492 at 575.590 kb on + strand, within Shewana3_0492 at 575.592 kb on + strand, within Shewana3_0492 at 575.825 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.890 kb on - strand, within Shewana3_0492 at 576.084 kb on + strand at 576.092 kb on - strand at 576.274 kb on - strand at 576.476 kb on + strand, within Shewana3_0493 at 576.509 kb on - strand, within Shewana3_0493 at 576.816 kb on + strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.893 kb on - strand at 577.039 kb on - strand, within Shewana3_0494 at 577.128 kb on + strand, within Shewana3_0494
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 574,555 - -0.8 574,670 - +0.4 574,723 - Shewana3_0491 0.14 -0.9 574,795 + Shewana3_0491 0.23 +0.7 574,887 + Shewana3_0491 0.35 +0.4 574,895 - Shewana3_0491 0.36 -0.3 574,897 + Shewana3_0491 0.36 -0.5 574,897 + Shewana3_0491 0.36 -0.1 574,897 + Shewana3_0491 0.36 -0.3 575,049 + Shewana3_0491 0.55 +0.3 575,160 - Shewana3_0491 0.70 -1.0 575,175 + Shewana3_0491 0.72 +0.4 575,180 + Shewana3_0491 0.72 +0.2 575,209 + Shewana3_0491 0.76 -0.2 575,265 + Shewana3_0491 0.83 +0.2 575,397 + -0.0 575,397 + -0.3 575,409 + +1.5 575,441 + +0.3 575,449 - -1.0 575,486 - -0.7 575,541 - Shewana3_0492 0.12 -2.3 575,584 - Shewana3_0492 0.18 +0.1 575,590 + Shewana3_0492 0.19 +0.3 575,592 + Shewana3_0492 0.19 +0.1 575,825 - Shewana3_0492 0.54 -1.3 575,860 - Shewana3_0492 0.59 +0.2 575,860 - Shewana3_0492 0.59 -1.1 575,890 - Shewana3_0492 0.64 -1.8 576,084 + +1.0 576,092 - -0.5 576,274 - -0.3 576,476 + Shewana3_0493 0.36 +0.8 576,509 - Shewana3_0493 0.41 -0.4 576,816 + Shewana3_0493 0.84 +0.5 576,824 - Shewana3_0493 0.85 -0.4 576,824 - Shewana3_0493 0.85 -0.0 576,893 - +0.6 577,039 - Shewana3_0494 0.11 +0.2 577,128 + Shewana3_0494 0.21 +0.7
Or see this region's nucleotide sequence