Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0489 and Shewana3_0490 are separated by 58 nucleotides Shewana3_0490 and Shewana3_0491 are separated by 93 nucleotides Shewana3_0491 and Shewana3_0492 are separated by 64 nucleotides
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Shewana3_0490: Shewana3_0490 - rhodanese domain-containing protein (RefSeq), at 574,080 to 574,523
_0490
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Position (kb) 574
575 Strain fitness (log2 ratio) -1
0
1 at 573.089 kb on - strand, within Shewana3_0489 at 573.118 kb on + strand, within Shewana3_0489 at 573.118 kb on + strand, within Shewana3_0489 at 573.126 kb on - strand, within Shewana3_0489 at 573.126 kb on - strand, within Shewana3_0489 at 573.224 kb on + strand, within Shewana3_0489 at 573.232 kb on - strand, within Shewana3_0489 at 573.330 kb on - strand, within Shewana3_0489 at 573.363 kb on - strand, within Shewana3_0489 at 573.513 kb on + strand, within Shewana3_0489 at 573.574 kb on - strand, within Shewana3_0489 at 573.595 kb on + strand, within Shewana3_0489 at 573.604 kb on + strand, within Shewana3_0489 at 573.671 kb on - strand, within Shewana3_0489 at 573.673 kb on + strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.681 kb on - strand, within Shewana3_0489 at 573.734 kb on + strand, within Shewana3_0489 at 573.742 kb on - strand, within Shewana3_0489 at 573.824 kb on - strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.953 kb on + strand at 573.961 kb on - strand at 573.961 kb on - strand at 573.961 kb on - strand at 574.031 kb on + strand at 574.039 kb on - strand at 574.066 kb on - strand at 574.176 kb on + strand, within Shewana3_0490 at 574.320 kb on + strand, within Shewana3_0490 at 574.455 kb on + strand, within Shewana3_0490 at 574.555 kb on - strand at 574.670 kb on - strand at 574.723 kb on - strand, within Shewana3_0491 at 574.795 kb on + strand, within Shewana3_0491 at 574.887 kb on + strand, within Shewana3_0491 at 574.895 kb on - strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 574.897 kb on + strand, within Shewana3_0491 at 575.049 kb on + strand, within Shewana3_0491 at 575.160 kb on - strand, within Shewana3_0491 at 575.175 kb on + strand, within Shewana3_0491 at 575.180 kb on + strand, within Shewana3_0491 at 575.209 kb on + strand, within Shewana3_0491 at 575.265 kb on + strand, within Shewana3_0491 at 575.397 kb on + strand at 575.397 kb on + strand at 575.409 kb on + strand at 575.441 kb on + strand at 575.449 kb on - strand at 575.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 573,089 - Shewana3_0489 0.56 -0.6 573,118 + Shewana3_0489 0.58 +0.8 573,118 + Shewana3_0489 0.58 -0.4 573,126 - Shewana3_0489 0.58 -0.7 573,126 - Shewana3_0489 0.58 -0.7 573,224 + Shewana3_0489 0.63 +0.1 573,232 - Shewana3_0489 0.63 +0.1 573,330 - Shewana3_0489 0.68 -0.6 573,363 - Shewana3_0489 0.69 +0.7 573,513 + Shewana3_0489 0.76 +0.3 573,574 - Shewana3_0489 0.79 -0.7 573,595 + Shewana3_0489 0.80 -0.2 573,604 + Shewana3_0489 0.80 +0.7 573,671 - Shewana3_0489 0.84 -0.7 573,673 + Shewana3_0489 0.84 +0.5 573,681 - Shewana3_0489 0.84 +0.4 573,681 - Shewana3_0489 0.84 -0.5 573,734 + Shewana3_0489 0.86 +0.9 573,742 - Shewana3_0489 0.87 +0.2 573,824 - -0.5 573,953 + +0.7 573,953 + +0.9 573,953 + +0.6 573,953 + +0.6 573,961 - +0.1 573,961 - -0.3 573,961 - -0.3 574,031 + +0.4 574,039 - +1.3 574,066 - +0.6 574,176 + Shewana3_0490 0.22 +0.5 574,320 + Shewana3_0490 0.54 +0.2 574,455 + Shewana3_0490 0.84 +0.4 574,555 - -0.8 574,670 - +0.4 574,723 - Shewana3_0491 0.14 -0.9 574,795 + Shewana3_0491 0.23 +0.7 574,887 + Shewana3_0491 0.35 +0.4 574,895 - Shewana3_0491 0.36 -0.3 574,897 + Shewana3_0491 0.36 -0.5 574,897 + Shewana3_0491 0.36 -0.1 574,897 + Shewana3_0491 0.36 -0.3 575,049 + Shewana3_0491 0.55 +0.3 575,160 - Shewana3_0491 0.70 -1.0 575,175 + Shewana3_0491 0.72 +0.4 575,180 + Shewana3_0491 0.72 +0.2 575,209 + Shewana3_0491 0.76 -0.2 575,265 + Shewana3_0491 0.83 +0.2 575,397 + -0.0 575,397 + -0.3 575,409 + +1.5 575,441 + +0.3 575,449 - -1.0 575,486 - -0.7
Or see this region's nucleotide sequence