Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0486 and Shewana3_0487 are separated by 49 nucleotides Shewana3_0487 and Shewana3_0488 overlap by 4 nucleotides Shewana3_0488 and Shewana3_0489 are separated by 515 nucleotides
Shewana3_0486: Shewana3_0486 - redoxin domain-containing protein (RefSeq), at 568,287 to 568,871
_0486
Shewana3_0487: Shewana3_0487 - cytochrome C biogenesis protein (RefSeq), at 568,921 to 569,340
_0487
Shewana3_0488: Shewana3_0488 - cytochrome c-type biogenesis protein CcmF (RefSeq), at 569,337 to 571,376
_0488
Shewana3_0489: Shewana3_0489 - cytochrome c, putative (RefSeq), at 571,892 to 574,021
_0489
Position (kb) 569
570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 568.423 kb on + strand, within Shewana3_0486 at 568.431 kb on - strand, within Shewana3_0486 at 568.480 kb on - strand, within Shewana3_0486 at 568.628 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.658 kb on + strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.666 kb on - strand, within Shewana3_0486 at 568.754 kb on + strand, within Shewana3_0486 at 568.803 kb on + strand, within Shewana3_0486 at 568.818 kb on + strand at 568.873 kb on + strand at 568.911 kb on + strand at 568.918 kb on + strand at 568.950 kb on - strand at 569.164 kb on + strand, within Shewana3_0487 at 569.169 kb on + strand, within Shewana3_0487 at 569.172 kb on - strand, within Shewana3_0487 at 569.177 kb on - strand, within Shewana3_0487 at 569.406 kb on - strand at 569.530 kb on - strand at 569.627 kb on + strand, within Shewana3_0488 at 569.634 kb on - strand, within Shewana3_0488 at 569.639 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.767 kb on - strand, within Shewana3_0488 at 569.775 kb on + strand, within Shewana3_0488 at 569.893 kb on + strand, within Shewana3_0488 at 569.901 kb on - strand, within Shewana3_0488 at 569.936 kb on + strand, within Shewana3_0488 at 569.939 kb on + strand, within Shewana3_0488 at 569.944 kb on - strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.018 kb on + strand, within Shewana3_0488 at 570.057 kb on + strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.059 kb on - strand, within Shewana3_0488 at 570.065 kb on - strand, within Shewana3_0488 at 570.138 kb on + strand, within Shewana3_0488 at 570.276 kb on - strand, within Shewana3_0488 at 570.284 kb on - strand, within Shewana3_0488 at 570.301 kb on + strand, within Shewana3_0488 at 570.356 kb on - strand, within Shewana3_0488 at 570.423 kb on + strand, within Shewana3_0488 at 570.431 kb on - strand, within Shewana3_0488 at 570.523 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.530 kb on - strand, within Shewana3_0488 at 570.532 kb on + strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.550 kb on - strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.560 kb on + strand, within Shewana3_0488 at 570.726 kb on + strand, within Shewana3_0488 at 570.726 kb on + strand, within Shewana3_0488 at 570.731 kb on + strand, within Shewana3_0488 at 570.781 kb on - strand, within Shewana3_0488 at 570.781 kb on - strand, within Shewana3_0488 at 570.821 kb on + strand, within Shewana3_0488 at 570.821 kb on + strand, within Shewana3_0488 at 570.829 kb on - strand, within Shewana3_0488 at 570.899 kb on - strand, within Shewana3_0488 at 570.970 kb on + strand, within Shewana3_0488 at 570.975 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.002 kb on + strand, within Shewana3_0488 at 571.005 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.010 kb on - strand, within Shewana3_0488 at 571.088 kb on + strand, within Shewana3_0488 at 571.094 kb on - strand, within Shewana3_0488 at 571.096 kb on - strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.098 kb on + strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.106 kb on - strand, within Shewana3_0488 at 571.141 kb on + strand, within Shewana3_0488 at 571.148 kb on - strand, within Shewana3_0488 at 571.149 kb on + strand, within Shewana3_0488 at 571.154 kb on + strand, within Shewana3_0488 at 571.162 kb on - strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.165 kb on + strand, within Shewana3_0488 at 571.173 kb on - strand at 571.188 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.200 kb on + strand at 571.208 kb on - strand at 571.208 kb on - strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.215 kb on + strand at 571.221 kb on + strand at 571.288 kb on - strand at 571.288 kb on - strand at 571.306 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.311 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.317 kb on + strand at 571.318 kb on + strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.319 kb on - strand at 571.322 kb on + strand at 571.323 kb on - strand at 571.325 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.335 kb on - strand at 571.383 kb on + strand at 571.383 kb on + strand at 571.390 kb on + strand at 571.391 kb on - strand at 571.423 kb on - strand at 571.496 kb on + strand at 571.504 kb on - strand at 571.523 kb on + strand at 571.523 kb on + strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.531 kb on - strand at 571.534 kb on + strand at 571.537 kb on + strand at 571.541 kb on + strand at 571.541 kb on + strand at 571.565 kb on + strand at 571.571 kb on - strand at 571.662 kb on + strand at 571.785 kb on + strand at 571.821 kb on + strand at 571.836 kb on + strand at 571.839 kb on - strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.841 kb on + strand at 571.842 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.843 kb on + strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.849 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.851 kb on - strand at 571.877 kb on + strand at 571.877 kb on + strand at 571.885 kb on - strand at 571.885 kb on - strand at 571.909 kb on - strand at 571.925 kb on - strand at 571.941 kb on + strand at 571.946 kb on + strand at 571.946 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.953 kb on + strand at 571.954 kb on + strand at 571.954 kb on + strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.954 kb on - strand at 571.959 kb on + strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.962 kb on - strand at 571.964 kb on - strand at 571.976 kb on - strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.987 kb on + strand at 571.988 kb on + strand at 571.988 kb on + strand at 571.989 kb on + strand at 571.989 kb on + strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.995 kb on - strand at 571.996 kb on - strand at 571.997 kb on - strand at 571.997 kb on - strand at 572.006 kb on - strand at 572.011 kb on - strand at 572.031 kb on - strand at 572.091 kb on + strand at 572.100 kb on - strand at 572.108 kb on - strand, within Shewana3_0489 at 572.125 kb on - strand, within Shewana3_0489 at 572.188 kb on + strand, within Shewana3_0489 at 572.191 kb on - strand, within Shewana3_0489 at 572.201 kb on + strand, within Shewana3_0489 at 572.207 kb on + strand, within Shewana3_0489 at 572.215 kb on - strand, within Shewana3_0489 at 572.225 kb on - strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.240 kb on + strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.246 kb on - strand, within Shewana3_0489 at 572.247 kb on + strand, within Shewana3_0489 at 572.248 kb on - strand, within Shewana3_0489 at 572.255 kb on - strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.257 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on + strand, within Shewana3_0489 at 572.266 kb on - strand, within Shewana3_0489 at 572.268 kb on + strand, within Shewana3_0489 at 572.292 kb on + strand, within Shewana3_0489 at 572.295 kb on - strand, within Shewana3_0489 at 572.297 kb on + strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.300 kb on - strand, within Shewana3_0489 at 572.302 kb on + strand, within Shewana3_0489 at 572.310 kb on + strand, within Shewana3_0489 at 572.310 kb on - strand, within Shewana3_0489 at 572.330 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489 at 572.331 kb on + strand, within Shewana3_0489
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 568,423 + Shewana3_0486 0.23 +0.6 568,431 - Shewana3_0486 0.25 -1.6 568,480 - Shewana3_0486 0.33 +0.6 568,628 + Shewana3_0486 0.58 +0.5 568,658 + Shewana3_0486 0.63 +0.2 568,658 + Shewana3_0486 0.63 +0.5 568,666 - Shewana3_0486 0.65 +0.5 568,666 - Shewana3_0486 0.65 -0.5 568,666 - Shewana3_0486 0.65 -0.0 568,754 + Shewana3_0486 0.80 +0.4 568,803 + Shewana3_0486 0.88 -0.1 568,818 + +0.1 568,873 + +0.5 568,911 + +0.9 568,918 + -0.0 568,950 - -1.5 569,164 + Shewana3_0487 0.58 +1.1 569,169 + Shewana3_0487 0.59 +0.7 569,172 - Shewana3_0487 0.60 -0.6 569,177 - Shewana3_0487 0.61 +0.3 569,406 - +0.6 569,530 - -1.3 569,627 + Shewana3_0488 0.14 -0.4 569,634 - Shewana3_0488 0.15 -1.1 569,639 - Shewana3_0488 0.15 +0.0 569,767 - Shewana3_0488 0.21 -0.8 569,767 - Shewana3_0488 0.21 +1.6 569,775 + Shewana3_0488 0.21 -1.4 569,893 + Shewana3_0488 0.27 +0.3 569,901 - Shewana3_0488 0.28 -0.5 569,936 + Shewana3_0488 0.29 -0.5 569,939 + Shewana3_0488 0.30 -0.4 569,944 - Shewana3_0488 0.30 -0.9 570,018 + Shewana3_0488 0.33 +0.4 570,018 + Shewana3_0488 0.33 -0.5 570,057 + Shewana3_0488 0.35 +0.1 570,059 - Shewana3_0488 0.35 -1.7 570,059 - Shewana3_0488 0.35 -0.4 570,059 - Shewana3_0488 0.35 -1.3 570,065 - Shewana3_0488 0.36 -1.2 570,138 + Shewana3_0488 0.39 -0.8 570,276 - Shewana3_0488 0.46 -0.9 570,284 - Shewana3_0488 0.46 -1.5 570,301 + Shewana3_0488 0.47 -1.2 570,356 - Shewana3_0488 0.50 -3.6 570,423 + Shewana3_0488 0.53 -1.0 570,431 - Shewana3_0488 0.54 -0.7 570,523 - Shewana3_0488 0.58 +0.2 570,530 - Shewana3_0488 0.58 +0.6 570,530 - Shewana3_0488 0.58 -0.3 570,530 - Shewana3_0488 0.58 -0.3 570,532 + Shewana3_0488 0.59 -0.6 570,550 - Shewana3_0488 0.59 -0.7 570,550 - Shewana3_0488 0.59 -0.5 570,550 - Shewana3_0488 0.59 -0.2 570,560 + Shewana3_0488 0.60 -0.7 570,560 + Shewana3_0488 0.60 -0.1 570,560 + Shewana3_0488 0.60 -0.8 570,726 + Shewana3_0488 0.68 -0.1 570,726 + Shewana3_0488 0.68 -0.3 570,731 + Shewana3_0488 0.68 +0.4 570,781 - Shewana3_0488 0.71 +0.1 570,781 - Shewana3_0488 0.71 +0.1 570,821 + Shewana3_0488 0.73 -1.4 570,821 + Shewana3_0488 0.73 +0.1 570,829 - Shewana3_0488 0.73 +0.0 570,899 - Shewana3_0488 0.77 +0.6 570,970 + Shewana3_0488 0.80 -2.6 570,975 + Shewana3_0488 0.80 +0.2 571,002 + Shewana3_0488 0.82 -2.2 571,002 + Shewana3_0488 0.82 +0.1 571,005 - Shewana3_0488 0.82 +0.4 571,010 - Shewana3_0488 0.82 +0.1 571,010 - Shewana3_0488 0.82 -0.5 571,088 + Shewana3_0488 0.86 -2.7 571,094 - Shewana3_0488 0.86 -0.6 571,096 - Shewana3_0488 0.86 +0.5 571,098 + Shewana3_0488 0.86 -0.5 571,098 + Shewana3_0488 0.86 -2.3 571,098 + Shewana3_0488 0.86 +0.7 571,106 - Shewana3_0488 0.87 +0.3 571,106 - Shewana3_0488 0.87 +0.2 571,106 - Shewana3_0488 0.87 +0.3 571,141 + Shewana3_0488 0.88 -1.6 571,148 - Shewana3_0488 0.89 -1.0 571,149 + Shewana3_0488 0.89 +0.2 571,154 + Shewana3_0488 0.89 -0.3 571,162 - Shewana3_0488 0.89 -2.4 571,165 + Shewana3_0488 0.90 -0.9 571,165 + Shewana3_0488 0.90 -1.9 571,173 - -1.3 571,188 + +0.7 571,200 + -2.4 571,200 + -1.1 571,200 + -0.5 571,200 + -1.6 571,200 + -2.1 571,208 - -0.0 571,208 - -0.2 571,215 + -1.9 571,215 + +0.1 571,215 + -3.2 571,221 + -1.5 571,288 - -1.0 571,288 - -2.0 571,306 + -1.3 571,311 + -1.5 571,311 + -0.2 571,311 + -1.1 571,311 + -2.5 571,311 + -0.9 571,317 + -1.0 571,317 + -0.2 571,317 + -1.9 571,318 + -1.1 571,319 - -0.9 571,319 - -0.6 571,319 - +0.1 571,319 - -2.2 571,319 - -1.7 571,322 + -2.6 571,323 - -1.7 571,325 - -1.0 571,327 + -1.4 571,327 + -0.6 571,327 + -1.6 571,327 + -0.9 571,335 - -2.8 571,335 - +0.0 571,335 - -2.7 571,335 - -1.9 571,335 - -1.8 571,335 - -2.9 571,335 - -3.6 571,335 - -0.7 571,335 - -1.8 571,383 + +0.1 571,383 + -0.4 571,390 + -2.3 571,391 - +0.4 571,423 - -1.3 571,496 + -1.0 571,504 - -1.0 571,523 + -3.0 571,523 + -2.4 571,531 - -3.1 571,531 - -1.5 571,531 - -1.8 571,531 - -2.0 571,534 + -1.4 571,537 + -1.3 571,541 + -0.7 571,541 + -2.9 571,565 + -1.3 571,571 - -1.3 571,662 + -0.1 571,785 + -0.5 571,821 + -0.0 571,836 + +0.2 571,839 - -1.1 571,841 + +0.2 571,841 + +0.4 571,841 + +0.6 571,841 + -0.4 571,841 + +0.2 571,841 + +0.3 571,841 + +0.3 571,841 + +0.3 571,842 + -0.3 571,843 + +0.4 571,843 + -0.1 571,843 + +0.2 571,843 + -0.1 571,843 + -0.1 571,843 + -2.1 571,849 - -1.0 571,849 - -1.6 571,849 - -1.3 571,849 - +0.2 571,849 - -1.7 571,851 - -1.0 571,851 - +0.1 571,851 - -1.2 571,877 + +0.4 571,877 + -0.3 571,885 - +0.7 571,885 - +1.7 571,909 - -2.1 571,925 - -1.1 571,941 + -0.3 571,946 + -2.7 571,946 + -0.2 571,953 + +0.1 571,953 + -0.3 571,953 + -0.9 571,953 + -0.9 571,953 + -0.9 571,954 + -0.4 571,954 + -0.3 571,954 - -1.9 571,954 - -0.0 571,954 - +0.7 571,959 + +0.3 571,962 - -3.3 571,962 - +0.7 571,962 - -0.6 571,962 - -1.6 571,962 - -0.8 571,964 - -0.9 571,976 - -1.0 571,987 + +0.3 571,987 + +0.2 571,987 + -1.9 571,987 + -1.0 571,987 + -0.5 571,987 + -0.9 571,987 + -1.4 571,987 + -1.9 571,987 + -1.5 571,987 + +0.2 571,987 + -1.6 571,987 + -3.3 571,987 + -1.8 571,987 + -1.5 571,987 + -1.5 571,988 + -0.8 571,988 + -0.9 571,989 + -1.9 571,989 + -2.2 571,995 - -0.8 571,995 - +0.1 571,995 - -1.8 571,995 - -0.0 571,995 - -0.3 571,995 - -0.6 571,995 - -0.4 571,995 - -0.9 571,995 - -0.5 571,995 - -0.6 571,995 - -0.3 571,995 - -0.0 571,995 - -1.4 571,995 - +2.4 571,995 - -1.1 571,995 - -2.4 571,996 - +0.9 571,997 - -1.8 571,997 - -2.4 572,006 - -0.7 572,011 - -1.9 572,031 - -1.4 572,091 + -0.3 572,100 - -1.4 572,108 - Shewana3_0489 0.10 -0.8 572,125 - Shewana3_0489 0.11 -0.0 572,188 + Shewana3_0489 0.14 -0.7 572,191 - Shewana3_0489 0.14 -1.4 572,201 + Shewana3_0489 0.15 -0.3 572,207 + Shewana3_0489 0.15 +0.4 572,215 - Shewana3_0489 0.15 +0.1 572,225 - Shewana3_0489 0.16 -1.1 572,240 + Shewana3_0489 0.16 -0.7 572,240 + Shewana3_0489 0.16 -0.5 572,246 - Shewana3_0489 0.17 -1.0 572,246 - Shewana3_0489 0.17 -1.0 572,247 + Shewana3_0489 0.17 -0.6 572,248 - Shewana3_0489 0.17 -1.5 572,255 - Shewana3_0489 0.17 +0.7 572,257 + Shewana3_0489 0.17 +0.1 572,257 + Shewana3_0489 0.17 +0.1 572,266 + Shewana3_0489 0.18 +0.2 572,266 + Shewana3_0489 0.18 -0.7 572,266 + Shewana3_0489 0.18 +0.0 572,266 + Shewana3_0489 0.18 -1.7 572,266 - Shewana3_0489 0.18 +0.0 572,268 + Shewana3_0489 0.18 -0.4 572,292 + Shewana3_0489 0.19 -2.7 572,295 - Shewana3_0489 0.19 -0.2 572,297 + Shewana3_0489 0.19 +0.6 572,300 - Shewana3_0489 0.19 -1.6 572,300 - Shewana3_0489 0.19 -1.4 572,302 + Shewana3_0489 0.19 -0.3 572,310 + Shewana3_0489 0.20 -2.0 572,310 - Shewana3_0489 0.20 -1.7 572,330 + Shewana3_0489 0.21 -1.2 572,331 + Shewana3_0489 0.21 -0.3 572,331 + Shewana3_0489 0.21 -1.5 572,331 + Shewana3_0489 0.21 -0.7
Or see this region's nucleotide sequence