Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0474 and Shewana3_0475 are separated by 146 nucleotides Shewana3_0475 and Shewana3_0476 are separated by 242 nucleotides
Shewana3_0474: Shewana3_0474 - 2-nitropropane dioxygenase, NPD (RefSeq), at 550,973 to 552,034
_0474
Shewana3_0475: Shewana3_0475 - hypothetical protein (RefSeq), at 552,181 to 553,326
_0475
Shewana3_0476: Shewana3_0476 - redoxin domain-containing protein (RefSeq), at 553,569 to 554,489
_0476
Position (kb) 552
553
554 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 551.299 kb on + strand, within Shewana3_0474 at 551.299 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.306 kb on + strand, within Shewana3_0474 at 551.307 kb on - strand, within Shewana3_0474 at 551.314 kb on - strand, within Shewana3_0474 at 551.341 kb on + strand, within Shewana3_0474 at 551.460 kb on + strand, within Shewana3_0474 at 551.680 kb on + strand, within Shewana3_0474 at 551.718 kb on - strand, within Shewana3_0474 at 551.759 kb on + strand, within Shewana3_0474 at 551.769 kb on - strand, within Shewana3_0474 at 551.853 kb on + strand, within Shewana3_0474 at 552.003 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.290 kb on - strand at 552.301 kb on + strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.309 kb on - strand, within Shewana3_0475 at 552.335 kb on - strand, within Shewana3_0475 at 552.360 kb on + strand, within Shewana3_0475 at 552.415 kb on + strand, within Shewana3_0475 at 552.438 kb on + strand, within Shewana3_0475 at 552.553 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.827 kb on + strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.835 kb on - strand, within Shewana3_0475 at 552.842 kb on - strand, within Shewana3_0475 at 553.023 kb on - strand, within Shewana3_0475 at 553.093 kb on + strand, within Shewana3_0475 at 553.116 kb on + strand, within Shewana3_0475 at 553.124 kb on - strand, within Shewana3_0475 at 553.244 kb on - strand at 553.288 kb on + strand at 553.289 kb on + strand at 553.316 kb on - strand at 553.335 kb on + strand at 553.341 kb on - strand at 553.487 kb on + strand at 553.855 kb on - strand, within Shewana3_0476 at 553.911 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.934 kb on - strand, within Shewana3_0476 at 553.954 kb on - strand, within Shewana3_0476 at 553.983 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.323 kb on - strand, within Shewana3_0476
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 551,299 + Shewana3_0474 0.31 -0.2 551,299 + Shewana3_0474 0.31 +0.4 551,306 + Shewana3_0474 0.31 +0.3 551,306 + Shewana3_0474 0.31 +0.5 551,306 + Shewana3_0474 0.31 +0.7 551,307 - Shewana3_0474 0.31 -1.4 551,314 - Shewana3_0474 0.32 +0.2 551,341 + Shewana3_0474 0.35 +0.2 551,460 + Shewana3_0474 0.46 +0.2 551,680 + Shewana3_0474 0.67 -1.1 551,718 - Shewana3_0474 0.70 -0.0 551,759 + Shewana3_0474 0.74 -0.1 551,769 - Shewana3_0474 0.75 -0.2 551,853 + Shewana3_0474 0.83 -0.0 552,003 + +1.0 552,253 + -1.5 552,253 + -0.8 552,290 - -1.1 552,301 + Shewana3_0475 0.10 -0.1 552,309 - Shewana3_0475 0.11 -0.1 552,309 - Shewana3_0475 0.11 -4.0 552,335 - Shewana3_0475 0.13 -0.2 552,360 + Shewana3_0475 0.16 -0.1 552,415 + Shewana3_0475 0.20 -2.3 552,438 + Shewana3_0475 0.22 +0.6 552,553 + Shewana3_0475 0.32 -0.7 552,827 + Shewana3_0475 0.56 -1.2 552,827 + Shewana3_0475 0.56 +0.1 552,835 - Shewana3_0475 0.57 -2.2 552,835 - Shewana3_0475 0.57 -1.1 552,842 - Shewana3_0475 0.58 -1.4 553,023 - Shewana3_0475 0.73 -0.3 553,093 + Shewana3_0475 0.80 +0.6 553,116 + Shewana3_0475 0.82 +0.4 553,124 - Shewana3_0475 0.82 +0.5 553,244 - -1.4 553,288 + +0.4 553,289 + +0.5 553,316 - -0.1 553,335 + +0.3 553,341 - +0.4 553,487 + -0.3 553,855 - Shewana3_0476 0.31 -0.4 553,911 + Shewana3_0476 0.37 +0.2 553,926 + Shewana3_0476 0.39 +0.8 553,926 + Shewana3_0476 0.39 +0.1 553,934 - Shewana3_0476 0.40 +0.8 553,954 - Shewana3_0476 0.42 -0.1 553,983 + Shewana3_0476 0.45 -0.4 554,315 + Shewana3_0476 0.81 +0.1 554,315 + Shewana3_0476 0.81 -1.0 554,315 + Shewana3_0476 0.81 -0.1 554,323 - Shewana3_0476 0.82 -0.2
Or see this region's nucleotide sequence