Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0467 and Shewana3_0468 are separated by 243 nucleotides
Shewana3_0467: Shewana3_0467 - hypothetical protein (RefSeq), at 541,429 to 543,396
_0467
Shewana3_0468: Shewana3_0468 - putative transcriptional regulator, CadC (RefSeq), at 543,640 to 544,560
_0468
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 540.705 kb on + strand at 541.115 kb on - strand at 541.115 kb on - strand at 541.308 kb on - strand at 541.422 kb on + strand at 541.451 kb on - strand at 541.485 kb on + strand at 541.702 kb on + strand, within Shewana3_0467 at 541.702 kb on + strand, within Shewana3_0467 at 541.848 kb on + strand, within Shewana3_0467 at 541.848 kb on + strand, within Shewana3_0467 at 541.856 kb on - strand, within Shewana3_0467 at 541.892 kb on + strand, within Shewana3_0467 at 542.028 kb on + strand, within Shewana3_0467 at 542.036 kb on - strand, within Shewana3_0467 at 542.061 kb on + strand, within Shewana3_0467 at 542.152 kb on + strand, within Shewana3_0467 at 542.301 kb on + strand, within Shewana3_0467 at 542.315 kb on - strand, within Shewana3_0467 at 542.367 kb on - strand, within Shewana3_0467 at 542.459 kb on + strand, within Shewana3_0467 at 542.538 kb on - strand, within Shewana3_0467 at 542.598 kb on + strand, within Shewana3_0467 at 542.605 kb on + strand, within Shewana3_0467 at 542.662 kb on + strand, within Shewana3_0467 at 542.844 kb on - strand, within Shewana3_0467 at 543.061 kb on - strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.063 kb on + strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.071 kb on - strand, within Shewana3_0467 at 543.092 kb on + strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.100 kb on - strand, within Shewana3_0467 at 543.124 kb on - strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.172 kb on + strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.180 kb on - strand, within Shewana3_0467 at 543.240 kb on + strand at 543.248 kb on + strand at 543.253 kb on + strand at 543.267 kb on - strand at 543.329 kb on + strand at 543.333 kb on + strand at 543.454 kb on - strand at 543.502 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.637 kb on + strand at 543.645 kb on - strand at 543.645 kb on - strand at 543.694 kb on + strand at 543.715 kb on - strand at 543.723 kb on - strand at 543.760 kb on + strand, within Shewana3_0468 at 543.770 kb on - strand, within Shewana3_0468 at 543.812 kb on + strand, within Shewana3_0468 at 543.925 kb on + strand, within Shewana3_0468 at 544.067 kb on + strand, within Shewana3_0468 at 544.091 kb on + strand, within Shewana3_0468 at 544.151 kb on + strand, within Shewana3_0468 at 544.160 kb on + strand, within Shewana3_0468 at 544.170 kb on - strand, within Shewana3_0468 at 544.321 kb on + strand, within Shewana3_0468 at 544.391 kb on - strand, within Shewana3_0468 at 544.396 kb on - strand, within Shewana3_0468
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 540,705 + -0.6 541,115 - -0.8 541,115 - -0.6 541,308 - +0.0 541,422 + -0.3 541,451 - -0.1 541,485 + -1.5 541,702 + Shewana3_0467 0.14 +0.2 541,702 + Shewana3_0467 0.14 +0.1 541,848 + Shewana3_0467 0.21 -0.2 541,848 + Shewana3_0467 0.21 -0.1 541,856 - Shewana3_0467 0.22 -1.1 541,892 + Shewana3_0467 0.24 -0.6 542,028 + Shewana3_0467 0.30 -0.3 542,036 - Shewana3_0467 0.31 +0.1 542,061 + Shewana3_0467 0.32 -1.5 542,152 + Shewana3_0467 0.37 -0.1 542,301 + Shewana3_0467 0.44 -0.0 542,315 - Shewana3_0467 0.45 +0.1 542,367 - Shewana3_0467 0.48 -1.3 542,459 + Shewana3_0467 0.52 -0.2 542,538 - Shewana3_0467 0.56 -0.5 542,598 + Shewana3_0467 0.59 +0.1 542,605 + Shewana3_0467 0.60 +0.3 542,662 + Shewana3_0467 0.63 +0.3 542,844 - Shewana3_0467 0.72 -0.7 543,061 - Shewana3_0467 0.83 -3.0 543,063 + Shewana3_0467 0.83 +0.5 543,063 + Shewana3_0467 0.83 +0.6 543,071 - Shewana3_0467 0.83 -1.2 543,071 - Shewana3_0467 0.83 -0.4 543,092 + Shewana3_0467 0.85 +0.0 543,100 - Shewana3_0467 0.85 -1.7 543,100 - Shewana3_0467 0.85 -1.2 543,124 - Shewana3_0467 0.86 -1.8 543,172 + Shewana3_0467 0.89 -0.5 543,172 + Shewana3_0467 0.89 +0.2 543,180 - Shewana3_0467 0.89 -1.0 543,180 - Shewana3_0467 0.89 -0.6 543,240 + +0.5 543,248 + +0.0 543,253 + -0.6 543,267 - +0.4 543,329 + +0.6 543,333 + -0.3 543,454 - +0.2 543,502 + -0.2 543,637 + -0.1 543,637 + -0.3 543,637 + -0.3 543,637 + -0.8 543,645 - -1.1 543,645 - -1.4 543,694 + +0.4 543,715 - +0.1 543,723 - -2.4 543,760 + Shewana3_0468 0.13 -0.2 543,770 - Shewana3_0468 0.14 -1.3 543,812 + Shewana3_0468 0.19 +0.7 543,925 + Shewana3_0468 0.31 -0.1 544,067 + Shewana3_0468 0.46 +0.1 544,091 + Shewana3_0468 0.49 -0.0 544,151 + Shewana3_0468 0.55 +0.2 544,160 + Shewana3_0468 0.56 +0.4 544,170 - Shewana3_0468 0.58 +0.1 544,321 + Shewana3_0468 0.74 -1.3 544,391 - Shewana3_0468 0.82 -1.1 544,396 - Shewana3_0468 0.82 -1.1
Or see this region's nucleotide sequence