Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0454 and Shewana3_0455 are separated by 49 nucleotides Shewana3_0455 and Shewana3_0456 are separated by 33 nucleotides Shewana3_0456 and Shewana3_0457 are separated by 107 nucleotides
Shewana3_0454: Shewana3_0454 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 528,926 to 529,912
_0454
Shewana3_0455: Shewana3_0455 - hypothetical protein (RefSeq), at 529,962 to 530,360
_0455
Shewana3_0456: Shewana3_0456 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 530,394 to 532,427
_0456
Shewana3_0457: Shewana3_0457 - response regulator receiver protein (RefSeq), at 532,535 to 533,491
_0457
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.450 kb on + strand, within Shewana3_0454 at 529.505 kb on + strand, within Shewana3_0454 at 529.632 kb on - strand, within Shewana3_0454 at 529.639 kb on + strand, within Shewana3_0454 at 529.688 kb on + strand, within Shewana3_0454 at 529.693 kb on + strand, within Shewana3_0454 at 529.711 kb on - strand, within Shewana3_0454 at 530.020 kb on - strand, within Shewana3_0455 at 530.050 kb on + strand, within Shewana3_0455 at 530.056 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.072 kb on + strand, within Shewana3_0455 at 530.298 kb on + strand, within Shewana3_0455 at 530.315 kb on + strand, within Shewana3_0455 at 530.316 kb on - strand, within Shewana3_0455 at 530.329 kb on + strand at 530.329 kb on + strand at 530.392 kb on - strand at 530.392 kb on - strand at 530.400 kb on - strand at 530.403 kb on - strand at 530.413 kb on - strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.462 kb on - strand at 530.492 kb on + strand at 530.693 kb on - strand, within Shewana3_0456 at 530.720 kb on + strand, within Shewana3_0456 at 530.775 kb on + strand, within Shewana3_0456 at 530.775 kb on + strand, within Shewana3_0456 at 530.919 kb on + strand, within Shewana3_0456 at 530.979 kb on - strand, within Shewana3_0456 at 531.073 kb on + strand, within Shewana3_0456 at 531.111 kb on - strand, within Shewana3_0456 at 531.128 kb on + strand, within Shewana3_0456 at 531.159 kb on - strand, within Shewana3_0456 at 531.190 kb on - strand, within Shewana3_0456 at 531.230 kb on + strand, within Shewana3_0456 at 531.230 kb on + strand, within Shewana3_0456 at 531.238 kb on - strand, within Shewana3_0456 at 531.300 kb on - strand, within Shewana3_0456 at 531.317 kb on + strand, within Shewana3_0456 at 531.325 kb on - strand, within Shewana3_0456 at 531.490 kb on + strand, within Shewana3_0456 at 531.728 kb on - strand, within Shewana3_0456 at 531.889 kb on - strand, within Shewana3_0456 at 531.907 kb on - strand, within Shewana3_0456 at 532.048 kb on + strand, within Shewana3_0456 at 532.072 kb on + strand, within Shewana3_0456 at 532.102 kb on - strand, within Shewana3_0456 at 532.135 kb on - strand, within Shewana3_0456 at 532.209 kb on + strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.225 kb on + strand at 532.363 kb on + strand at 532.363 kb on + strand at 532.371 kb on - strand at 532.375 kb on + strand at 532.442 kb on + strand at 532.447 kb on + strand at 532.450 kb on - strand at 532.450 kb on - strand at 532.467 kb on + strand at 532.474 kb on + strand at 532.519 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.580 kb on - strand at 532.670 kb on + strand, within Shewana3_0457 at 532.787 kb on + strand, within Shewana3_0457 at 532.903 kb on - strand, within Shewana3_0457 at 532.903 kb on - strand, within Shewana3_0457 at 532.907 kb on + strand, within Shewana3_0457 at 532.920 kb on + strand, within Shewana3_0457 at 532.928 kb on - strand, within Shewana3_0457 at 532.962 kb on - strand, within Shewana3_0457 at 533.209 kb on - strand, within Shewana3_0457 at 533.228 kb on + strand, within Shewana3_0457
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 529,450 + Shewana3_0454 0.53 -0.1 529,505 + Shewana3_0454 0.59 -0.3 529,632 - Shewana3_0454 0.72 -0.3 529,639 + Shewana3_0454 0.72 +0.1 529,688 + Shewana3_0454 0.77 -0.0 529,693 + Shewana3_0454 0.78 +0.4 529,711 - Shewana3_0454 0.80 +0.5 530,020 - Shewana3_0455 0.15 +0.1 530,050 + Shewana3_0455 0.22 +0.8 530,056 - Shewana3_0455 0.24 +0.5 530,058 - Shewana3_0455 0.24 +0.3 530,058 - Shewana3_0455 0.24 +2.2 530,058 - Shewana3_0455 0.24 +0.1 530,072 + Shewana3_0455 0.28 -1.3 530,298 + Shewana3_0455 0.84 -0.7 530,315 + Shewana3_0455 0.88 -1.6 530,316 - Shewana3_0455 0.89 +0.3 530,329 + -0.9 530,329 + -0.7 530,392 - +0.4 530,392 - -0.7 530,400 - +0.2 530,403 - +1.1 530,413 - -0.1 530,429 + -2.0 530,429 + -1.3 530,429 + -1.6 530,429 + -1.1 530,429 + -0.3 530,429 + -1.1 530,429 + -1.8 530,429 + -1.4 530,429 + -2.8 530,437 - +0.8 530,437 - -0.1 530,437 - -0.9 530,437 - -0.2 530,437 - +0.6 530,437 - +0.5 530,437 - +0.3 530,437 - +0.7 530,437 - +0.6 530,437 - +0.1 530,437 - -0.1 530,437 - +0.1 530,462 - +0.4 530,492 + -0.8 530,693 - Shewana3_0456 0.15 +0.5 530,720 + Shewana3_0456 0.16 -1.6 530,775 + Shewana3_0456 0.19 -0.9 530,775 + Shewana3_0456 0.19 -0.5 530,919 + Shewana3_0456 0.26 -1.9 530,979 - Shewana3_0456 0.29 +0.4 531,073 + Shewana3_0456 0.33 -1.2 531,111 - Shewana3_0456 0.35 -0.0 531,128 + Shewana3_0456 0.36 -1.6 531,159 - Shewana3_0456 0.38 +0.1 531,190 - Shewana3_0456 0.39 +0.3 531,230 + Shewana3_0456 0.41 -0.2 531,230 + Shewana3_0456 0.41 +0.5 531,238 - Shewana3_0456 0.41 +0.6 531,300 - Shewana3_0456 0.45 -0.6 531,317 + Shewana3_0456 0.45 +0.2 531,325 - Shewana3_0456 0.46 +0.1 531,490 + Shewana3_0456 0.54 -0.1 531,728 - Shewana3_0456 0.66 -0.4 531,889 - Shewana3_0456 0.74 +0.3 531,907 - Shewana3_0456 0.74 -0.8 532,048 + Shewana3_0456 0.81 -2.3 532,072 + Shewana3_0456 0.82 +0.0 532,102 - Shewana3_0456 0.84 -0.3 532,135 - Shewana3_0456 0.86 -0.6 532,209 + Shewana3_0456 0.89 -0.1 532,217 - Shewana3_0456 0.90 -0.5 532,217 - Shewana3_0456 0.90 -0.7 532,217 - Shewana3_0456 0.90 -0.3 532,217 - Shewana3_0456 0.90 -0.0 532,225 + -0.4 532,363 + +0.3 532,363 + +0.4 532,371 - +0.7 532,375 + +0.7 532,442 + +0.5 532,447 + +0.4 532,450 - -0.6 532,450 - -2.0 532,467 + +0.6 532,474 + -0.1 532,519 + -0.8 532,532 + -0.7 532,532 + -2.7 532,532 + -0.3 532,532 + -0.8 532,532 + -1.0 532,532 + -1.0 532,540 - +0.6 532,540 - +0.5 532,540 - +0.3 532,540 - +0.7 532,580 - -0.2 532,670 + Shewana3_0457 0.14 -0.9 532,787 + Shewana3_0457 0.26 -0.0 532,903 - Shewana3_0457 0.38 -0.1 532,903 - Shewana3_0457 0.38 +0.8 532,907 + Shewana3_0457 0.39 -1.0 532,920 + Shewana3_0457 0.40 +0.5 532,928 - Shewana3_0457 0.41 +0.3 532,962 - Shewana3_0457 0.45 -0.7 533,209 - Shewana3_0457 0.70 +0.3 533,228 + Shewana3_0457 0.72 -1.5
Or see this region's nucleotide sequence