Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0411 and Shewana3_0412 are separated by 74 nucleotides Shewana3_0412 and Shewana3_0413 are separated by 147 nucleotides Shewana3_0413 and Shewana3_0414 are separated by 34 nucleotides Shewana3_0414 and Shewana3_0415 are separated by 107 nucleotides
Shewana3_0411: Shewana3_0411 - Ppx/GppA phosphatase (RefSeq), at 470,567 to 471,493
_0411
Shewana3_0412: Shewana3_0412 - hypothetical protein (RefSeq), at 471,568 to 472,104
_0412
Shewana3_0413: Shewana3_0413 - mutator MutT protein (RefSeq), at 472,252 to 472,650
_0413
Shewana3_0414: Shewana3_0414 - hypothetical protein (RefSeq), at 472,685 to 472,894
_0414
Shewana3_0415: Shewana3_0415 - hypothetical protein (RefSeq), at 473,002 to 473,736
_0415
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1 at 470.687 kb on + strand, within Shewana3_0411 at 470.779 kb on + strand, within Shewana3_0411 at 470.787 kb on - strand, within Shewana3_0411 at 470.830 kb on - strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.834 kb on + strand, within Shewana3_0411 at 470.870 kb on - strand, within Shewana3_0411 at 470.989 kb on + strand, within Shewana3_0411 at 471.041 kb on + strand, within Shewana3_0411 at 471.055 kb on - strand, within Shewana3_0411 at 471.139 kb on + strand, within Shewana3_0411 at 471.140 kb on + strand, within Shewana3_0411 at 471.163 kb on + strand, within Shewana3_0411 at 471.261 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.280 kb on + strand, within Shewana3_0411 at 471.528 kb on + strand at 471.529 kb on + strand at 471.553 kb on - strand at 471.725 kb on + strand, within Shewana3_0412 at 471.969 kb on + strand, within Shewana3_0412 at 472.172 kb on - strand at 472.445 kb on - strand, within Shewana3_0413 at 472.503 kb on - strand, within Shewana3_0413 at 472.622 kb on - strand at 472.710 kb on + strand, within Shewana3_0414 at 472.744 kb on + strand, within Shewana3_0414 at 472.984 kb on - strand at 472.991 kb on - strand at 473.042 kb on + strand at 473.072 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 470,687 + Shewana3_0411 0.13 +0.8 470,779 + Shewana3_0411 0.23 +1.2 470,787 - Shewana3_0411 0.24 +0.3 470,830 - Shewana3_0411 0.28 -1.7 470,834 + Shewana3_0411 0.29 +0.6 470,834 + Shewana3_0411 0.29 +0.8 470,870 - Shewana3_0411 0.33 -0.7 470,989 + Shewana3_0411 0.46 +0.3 471,041 + Shewana3_0411 0.51 +0.5 471,055 - Shewana3_0411 0.53 -0.0 471,139 + Shewana3_0411 0.62 +0.8 471,140 + Shewana3_0411 0.62 +0.3 471,163 + Shewana3_0411 0.64 +0.7 471,261 + Shewana3_0411 0.75 +0.7 471,280 + Shewana3_0411 0.77 +0.7 471,280 + Shewana3_0411 0.77 +0.6 471,528 + -0.9 471,529 + -0.2 471,553 - +0.3 471,725 + Shewana3_0412 0.29 -0.0 471,969 + Shewana3_0412 0.75 -0.3 472,172 - +0.0 472,445 - Shewana3_0413 0.48 +0.0 472,503 - Shewana3_0413 0.63 +0.7 472,622 - +0.9 472,710 + Shewana3_0414 0.12 -2.4 472,744 + Shewana3_0414 0.28 -0.9 472,984 - +0.2 472,991 - -0.5 473,042 + -0.4 473,072 - -1.2
Or see this region's nucleotide sequence