Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0406 and Shewana3_0407 are separated by 118 nucleotides Shewana3_0407 and rho are separated by 177 nucleotides
Shewana3_0406: Shewana3_0406 - alcohol dehydrogenase (RefSeq), at 465,040 to 466,062
_0406
Shewana3_0407: Shewana3_0407 - LysR family transcriptional regulator (RefSeq), at 466,181 to 467,113
_0407
Shewana3_0408: rho - transcription termination factor Rho (RefSeq), at 467,291 to 468,556
rho
Position (kb) 466
467
468 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 465.289 kb on - strand, within Shewana3_0406 at 465.344 kb on + strand, within Shewana3_0406 at 465.395 kb on - strand, within Shewana3_0406 at 465.397 kb on + strand, within Shewana3_0406 at 465.573 kb on + strand, within Shewana3_0406 at 465.692 kb on + strand, within Shewana3_0406 at 465.708 kb on + strand, within Shewana3_0406 at 465.853 kb on - strand, within Shewana3_0406 at 465.905 kb on - strand, within Shewana3_0406 at 465.955 kb on - strand, within Shewana3_0406 at 465.974 kb on - strand at 465.974 kb on - strand at 466.251 kb on + strand at 466.374 kb on - strand, within Shewana3_0407 at 466.606 kb on + strand, within Shewana3_0407 at 466.716 kb on + strand, within Shewana3_0407 at 466.716 kb on + strand, within Shewana3_0407 at 466.716 kb on - strand, within Shewana3_0407 at 466.885 kb on - strand, within Shewana3_0407 at 466.936 kb on + strand, within Shewana3_0407 at 466.937 kb on + strand, within Shewana3_0407 at 467.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 465,289 - Shewana3_0406 0.24 +0.7 465,344 + Shewana3_0406 0.30 -0.3 465,395 - Shewana3_0406 0.35 +0.1 465,397 + Shewana3_0406 0.35 +1.2 465,573 + Shewana3_0406 0.52 +1.0 465,692 + Shewana3_0406 0.64 -0.9 465,708 + Shewana3_0406 0.65 -4.5 465,853 - Shewana3_0406 0.79 -0.7 465,905 - Shewana3_0406 0.85 -0.1 465,955 - Shewana3_0406 0.89 +0.0 465,974 - +0.2 465,974 - +0.7 466,251 + -1.0 466,374 - Shewana3_0407 0.21 -0.7 466,606 + Shewana3_0407 0.46 -0.2 466,716 + Shewana3_0407 0.57 -0.8 466,716 + Shewana3_0407 0.57 -0.5 466,716 - Shewana3_0407 0.57 -1.6 466,885 - Shewana3_0407 0.75 -0.9 466,936 + Shewana3_0407 0.81 +0.0 466,937 + Shewana3_0407 0.81 +0.2 467,200 - -0.6
Or see this region's nucleotide sequence