Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0390 and dapF are separated by 70 nucleotides dapF and Shewana3_0392 overlap by 4 nucleotides Shewana3_0392 and Shewana3_0393 are separated by 48 nucleotides Shewana3_0393 and Shewana3_0394 overlap by 1 nucleotides
Shewana3_0390: Shewana3_0390 - diaminopimelate decarboxylase (RefSeq), at 450,725 to 451,969
_0390
Shewana3_0391: dapF - diaminopimelate epimerase (RefSeq), at 452,040 to 452,867
dapF
Shewana3_0392: Shewana3_0392 - hypothetical protein (RefSeq), at 452,864 to 453,499
_0392
Shewana3_0393: Shewana3_0393 - tyrosine recombinase XerC (RefSeq), at 453,548 to 454,447
_0393
Shewana3_0394: Shewana3_0394 - HAD family hydrolase (RefSeq), at 454,447 to 455,169
_0394
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 451.911 kb on - strand at 451.939 kb on + strand at 452.873 kb on - strand at 452.968 kb on + strand, within Shewana3_0392 at 453.232 kb on - strand, within Shewana3_0392 at 453.458 kb on + strand at 453.485 kb on - strand at 453.493 kb on + strand at 453.501 kb on - strand at 453.501 kb on - strand at 453.502 kb on - strand at 453.686 kb on - strand, within Shewana3_0393 at 453.751 kb on - strand, within Shewana3_0393 at 453.860 kb on - strand, within Shewana3_0393 at 453.975 kb on - strand, within Shewana3_0393 at 454.004 kb on + strand, within Shewana3_0393 at 454.012 kb on - strand, within Shewana3_0393 at 454.260 kb on + strand, within Shewana3_0393 at 454.295 kb on + strand, within Shewana3_0393 at 454.408 kb on - strand at 454.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 451,911 - -2.1 451,939 + +0.8 452,873 - -0.5 452,968 + Shewana3_0392 0.16 -0.8 453,232 - Shewana3_0392 0.58 -2.8 453,458 + -0.1 453,485 - -2.4 453,493 + +0.4 453,501 - -0.9 453,501 - +0.1 453,502 - -2.3 453,686 - Shewana3_0393 0.15 -1.4 453,751 - Shewana3_0393 0.23 -3.5 453,860 - Shewana3_0393 0.35 -2.7 453,975 - Shewana3_0393 0.47 -2.4 454,004 + Shewana3_0393 0.51 -3.6 454,012 - Shewana3_0393 0.52 +0.6 454,260 + Shewana3_0393 0.79 +0.6 454,295 + Shewana3_0393 0.83 -3.1 454,408 - -1.7 454,408 - -1.9
Or see this region's nucleotide sequence