Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0380 and Shewana3_0381 overlap by 4 nucleotides Shewana3_0381 and Shewana3_0382 are separated by 88 nucleotides
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Shewana3_0381: Shewana3_0381 - ABC transporter related (RefSeq), at 423,148 to 425,325
_0381
Shewana3_0382: Shewana3_0382 - putative outer membrane adhesin like proteiin (RefSeq), at 425,414 to 442,933
_0382
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380 at 422.985 kb on + strand, within Shewana3_0380 at 423.066 kb on - strand at 423.298 kb on + strand at 423.299 kb on + strand at 423.299 kb on + strand at 423.307 kb on - strand at 423.428 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.615 kb on - strand, within Shewana3_0381 at 423.663 kb on + strand, within Shewana3_0381 at 423.677 kb on - strand, within Shewana3_0381 at 423.760 kb on - strand, within Shewana3_0381 at 423.788 kb on - strand, within Shewana3_0381 at 423.933 kb on - strand, within Shewana3_0381 at 423.943 kb on - strand, within Shewana3_0381 at 423.953 kb on - strand, within Shewana3_0381 at 424.246 kb on - strand, within Shewana3_0381 at 424.338 kb on + strand, within Shewana3_0381 at 424.456 kb on + strand, within Shewana3_0381 at 424.482 kb on - strand, within Shewana3_0381 at 424.482 kb on - strand, within Shewana3_0381 at 424.810 kb on + strand, within Shewana3_0381 at 424.822 kb on + strand, within Shewana3_0381 at 425.154 kb on - strand at 425.156 kb on - strand at 425.245 kb on + strand at 425.251 kb on - strand at 425.333 kb on - strand at 425.333 kb on - strand at 425.442 kb on + strand at 425.510 kb on + strand at 425.589 kb on - strand at 425.656 kb on - strand at 425.798 kb on + strand at 425.803 kb on - strand at 425.872 kb on - strand at 425.899 kb on - strand at 426.063 kb on + strand at 426.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 422,302 - Shewana3_0380 0.39 +0.1 422,360 + Shewana3_0380 0.43 -3.8 422,368 - Shewana3_0380 0.43 +0.0 422,385 - Shewana3_0380 0.45 -0.1 422,400 - Shewana3_0380 0.46 -0.3 422,495 - Shewana3_0380 0.52 +0.7 422,629 - Shewana3_0380 0.62 +0.0 422,985 + Shewana3_0380 0.88 -0.0 423,066 - -0.4 423,298 + -1.6 423,299 + -0.6 423,299 + -0.3 423,307 - -0.9 423,428 - Shewana3_0381 0.13 -0.0 423,485 - Shewana3_0381 0.15 -0.6 423,485 - Shewana3_0381 0.15 -0.0 423,615 - Shewana3_0381 0.21 -0.3 423,663 + Shewana3_0381 0.24 -2.0 423,677 - Shewana3_0381 0.24 +0.1 423,760 - Shewana3_0381 0.28 -0.0 423,788 - Shewana3_0381 0.29 -0.3 423,933 - Shewana3_0381 0.36 +0.0 423,943 - Shewana3_0381 0.37 -0.3 423,953 - Shewana3_0381 0.37 -0.3 424,246 - Shewana3_0381 0.50 +0.1 424,338 + Shewana3_0381 0.55 +0.0 424,456 + Shewana3_0381 0.60 -0.9 424,482 - Shewana3_0381 0.61 -0.6 424,482 - Shewana3_0381 0.61 -0.1 424,810 + Shewana3_0381 0.76 -0.3 424,822 + Shewana3_0381 0.77 -0.6 425,154 - -0.6 425,156 - -1.4 425,245 + -1.4 425,251 - +0.5 425,333 - -0.5 425,333 - -0.1 425,442 + -0.3 425,510 + -1.0 425,589 - +0.5 425,656 - +0.6 425,798 + -2.0 425,803 - +0.6 425,872 - +0.5 425,899 - +0.5 426,063 + -2.2 426,083 + -3.4
Or see this region's nucleotide sequence