Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0371 and Shewana3_0372 are separated by 13 nucleotides Shewana3_0372 and Shewana3_0373 are separated by 25 nucleotides Shewana3_0373 and Shewana3_0374 are separated by 323 nucleotides
Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520
_0371
Shewana3_0372: Shewana3_0372 - RND family efflux transporter MFP subunit (RefSeq), at 409,534 to 410,652
_0372
Shewana3_0373: Shewana3_0373 - TetR family transcriptional regulator (RefSeq), at 410,678 to 411,244
_0373
Shewana3_0374: Shewana3_0374 - ATP-dependent DNA helicase Rep (RefSeq), at 411,568 to 413,583
_0374
Position (kb)
409
410
411 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 408.558 kb on + strand, within Shewana3_0371 at 408.665 kb on + strand, within Shewana3_0371 at 408.806 kb on + strand, within Shewana3_0371 at 408.961 kb on - strand, within Shewana3_0371 at 409.106 kb on + strand, within Shewana3_0371 at 409.114 kb on - strand, within Shewana3_0371 at 409.166 kb on + strand, within Shewana3_0371 at 409.166 kb on + strand, within Shewana3_0371 at 409.174 kb on - strand, within Shewana3_0371 at 409.225 kb on + strand at 409.233 kb on - strand at 409.233 kb on - strand at 409.233 kb on - strand at 409.280 kb on - strand at 409.312 kb on - strand at 409.482 kb on + strand at 409.530 kb on - strand at 409.550 kb on + strand at 409.561 kb on + strand at 409.569 kb on - strand at 409.686 kb on + strand, within Shewana3_0372 at 409.712 kb on + strand, within Shewana3_0372 at 409.755 kb on + strand, within Shewana3_0372 at 409.763 kb on - strand, within Shewana3_0372 at 409.776 kb on + strand, within Shewana3_0372 at 409.970 kb on + strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 410.019 kb on + strand, within Shewana3_0372 at 410.290 kb on + strand, within Shewana3_0372 at 410.495 kb on - strand, within Shewana3_0372 at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.583 kb on + strand at 410.591 kb on - strand at 410.591 kb on - strand at 410.591 kb on - strand at 410.606 kb on + strand at 410.616 kb on - strand at 410.654 kb on + strand at 410.796 kb on - strand, within Shewana3_0373 at 410.930 kb on + strand, within Shewana3_0373 at 410.948 kb on + strand, within Shewana3_0373 at 411.030 kb on + strand, within Shewana3_0373 at 411.083 kb on - strand, within Shewana3_0373 at 411.220 kb on + strand at 411.220 kb on + strand at 411.222 kb on + strand at 411.226 kb on - strand at 411.378 kb on + strand at 411.433 kb on + strand at 411.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 408,558 + Shewana3_0371 0.69 -0.5 408,665 + Shewana3_0371 0.72 +0.4 408,806 + Shewana3_0371 0.77 -1.2 408,961 - Shewana3_0371 0.82 -0.3 409,106 + Shewana3_0371 0.87 -0.0 409,114 - Shewana3_0371 0.87 -0.8 409,166 + Shewana3_0371 0.89 -0.5 409,166 + Shewana3_0371 0.89 +0.5 409,174 - Shewana3_0371 0.89 -0.6 409,225 + -0.5 409,233 - -1.9 409,233 - +0.2 409,233 - +0.2 409,280 - +0.3 409,312 - +0.1 409,482 + +0.0 409,530 - +0.1 409,550 + +0.1 409,561 + -0.1 409,569 - +1.2 409,686 + Shewana3_0372 0.14 -0.8 409,712 + Shewana3_0372 0.16 -1.7 409,755 + Shewana3_0372 0.20 +0.1 409,763 - Shewana3_0372 0.20 +0.5 409,776 + Shewana3_0372 0.22 -2.9 409,970 + Shewana3_0372 0.39 -0.5 409,978 - Shewana3_0372 0.40 -0.7 409,978 - Shewana3_0372 0.40 -1.2 410,019 + Shewana3_0372 0.43 -0.5 410,290 + Shewana3_0372 0.68 +0.4 410,495 - Shewana3_0372 0.86 -0.9 410,583 + +0.2 410,583 + +0.6 410,583 + +0.1 410,583 + +0.1 410,583 + -0.7 410,591 - -0.6 410,591 - +0.4 410,591 - +0.1 410,606 + +0.7 410,616 - -0.3 410,654 + -0.2 410,796 - Shewana3_0373 0.21 -0.4 410,930 + Shewana3_0373 0.44 -0.7 410,948 + Shewana3_0373 0.48 -0.7 411,030 + Shewana3_0373 0.62 -0.4 411,083 - Shewana3_0373 0.71 +0.6 411,220 + -2.0 411,220 + -1.0 411,222 + -0.9 411,226 - -0.1 411,378 + +0.5 411,433 + +0.5 411,449 - +0.5
Or see this region's nucleotide sequence