Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0365 and Shewana3_0366 are separated by 162 nucleotides Shewana3_0366 and Shewana3_0367 are separated by 236 nucleotides Shewana3_0367 and Shewana3_0368 overlap by 4 nucleotides Shewana3_0368 and Shewana3_0369 are separated by 59 nucleotides Shewana3_0369 and Shewana3_0370 are separated by 94 nucleotides
Shewana3_0365: Shewana3_0365 - hypothetical protein (RefSeq), at 401,643 to 403,118
_0365
Shewana3_0366: Shewana3_0366 - hypothetical protein (RefSeq), at 403,281 to 403,808
_0366
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573
_0368
Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965
_0369
Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314
_0370
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 403.089 kb on + strand at 403.359 kb on - strand, within Shewana3_0366 at 403.394 kb on + strand, within Shewana3_0366 at 403.541 kb on + strand, within Shewana3_0366 at 403.572 kb on - strand, within Shewana3_0366 at 403.683 kb on + strand, within Shewana3_0366 at 403.717 kb on + strand, within Shewana3_0366 at 403.842 kb on - strand at 403.875 kb on + strand at 403.877 kb on - strand at 404.107 kb on - strand at 404.108 kb on - strand at 404.249 kb on - strand, within Shewana3_0367 at 404.385 kb on - strand, within Shewana3_0367 at 404.714 kb on - strand, within Shewana3_0367 at 404.958 kb on + strand, within Shewana3_0367 at 405.317 kb on + strand, within Shewana3_0368 at 405.339 kb on - strand, within Shewana3_0368 at 405.509 kb on + strand, within Shewana3_0368 at 405.638 kb on + strand at 405.818 kb on - strand, within Shewana3_0369 at 405.848 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.917 kb on + strand, within Shewana3_0369 at 405.927 kb on + strand, within Shewana3_0369 at 405.935 kb on - strand at 405.935 kb on - strand at 406.187 kb on - strand, within Shewana3_0370
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 403,089 + +0.3 403,359 - Shewana3_0366 0.15 +0.1 403,394 + Shewana3_0366 0.21 -0.7 403,541 + Shewana3_0366 0.49 +0.2 403,572 - Shewana3_0366 0.55 -1.3 403,683 + Shewana3_0366 0.76 +0.3 403,717 + Shewana3_0366 0.83 +0.3 403,842 - -0.5 403,875 + -0.4 403,877 - +1.0 404,107 - +0.4 404,108 - -1.6 404,249 - Shewana3_0367 0.17 +0.1 404,385 - Shewana3_0367 0.29 -0.2 404,714 - Shewana3_0367 0.57 -2.2 404,958 + Shewana3_0367 0.78 +0.1 405,317 + Shewana3_0368 0.30 +0.1 405,339 - Shewana3_0368 0.36 -0.8 405,509 + Shewana3_0368 0.82 -1.5 405,638 + +0.4 405,818 - Shewana3_0369 0.56 -1.1 405,848 - Shewana3_0369 0.65 -0.2 405,895 - Shewana3_0369 0.79 -1.0 405,895 - Shewana3_0369 0.79 -1.4 405,917 + Shewana3_0369 0.85 +0.2 405,927 + Shewana3_0369 0.88 +0.1 405,935 - -0.7 405,935 - -0.1 406,187 - Shewana3_0370 0.50 +1.4
Or see this region's nucleotide sequence