Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0347 and Shewana3_0348 are separated by 178 nucleotides Shewana3_0348 and Shewana3_0349 are separated by 387 nucleotides
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864
_0348
Shewana3_0349: Shewana3_0349 - periplasmic sugar-binding protein, putative (RefSeq), at 383,252 to 384,298
_0349
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347 at 380.351 kb on - strand, within Shewana3_0347 at 380.419 kb on - strand, within Shewana3_0347 at 380.637 kb on - strand at 380.670 kb on - strand at 380.701 kb on - strand at 380.712 kb on + strand at 380.767 kb on - strand at 380.938 kb on + strand at 380.945 kb on + strand at 381.030 kb on - strand, within Shewana3_0348 at 381.083 kb on - strand, within Shewana3_0348 at 381.108 kb on - strand, within Shewana3_0348 at 381.210 kb on - strand, within Shewana3_0348 at 381.234 kb on + strand, within Shewana3_0348 at 381.646 kb on + strand, within Shewana3_0348 at 381.654 kb on - strand, within Shewana3_0348 at 381.654 kb on - strand, within Shewana3_0348 at 381.659 kb on - strand, within Shewana3_0348 at 381.793 kb on - strand, within Shewana3_0348 at 381.794 kb on - strand, within Shewana3_0348 at 381.888 kb on + strand, within Shewana3_0348 at 381.968 kb on + strand, within Shewana3_0348 at 381.976 kb on - strand, within Shewana3_0348 at 381.976 kb on - strand, within Shewana3_0348 at 382.106 kb on + strand, within Shewana3_0348 at 382.135 kb on + strand, within Shewana3_0348 at 382.143 kb on - strand, within Shewana3_0348 at 382.143 kb on - strand, within Shewana3_0348 at 382.156 kb on + strand, within Shewana3_0348 at 382.156 kb on + strand, within Shewana3_0348 at 382.171 kb on + strand, within Shewana3_0348 at 382.174 kb on - strand, within Shewana3_0348 at 382.305 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.360 kb on + strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.368 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.547 kb on - strand, within Shewana3_0348 at 382.578 kb on - strand, within Shewana3_0348 at 382.579 kb on - strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.590 kb on + strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.613 kb on - strand, within Shewana3_0348 at 382.645 kb on - strand, within Shewana3_0348 at 382.678 kb on - strand at 382.722 kb on + strand at 382.727 kb on + strand at 382.735 kb on - strand at 382.735 kb on - strand at 382.751 kb on + strand at 382.751 kb on + strand at 382.868 kb on + strand at 382.893 kb on + strand at 382.901 kb on + strand at 382.901 kb on + strand at 382.901 kb on - strand at 382.901 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.903 kb on - strand at 382.916 kb on + strand at 382.919 kb on - strand at 382.921 kb on + strand at 382.940 kb on + strand at 382.940 kb on + strand at 382.947 kb on - strand at 382.947 kb on - strand at 382.949 kb on + strand at 382.995 kb on - strand at 382.998 kb on + strand at 383.115 kb on + strand at 383.115 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.196 kb on + strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.204 kb on - strand at 383.220 kb on + strand at 383.239 kb on + strand at 383.239 kb on + strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.242 kb on - strand at 383.263 kb on + strand at 383.263 kb on + strand at 383.271 kb on - strand at 383.271 kb on - strand at 383.284 kb on + strand at 383.335 kb on + strand at 383.383 kb on + strand, within Shewana3_0349 at 383.383 kb on + strand, within Shewana3_0349 at 383.391 kb on - strand, within Shewana3_0349 at 383.406 kb on - strand, within Shewana3_0349 at 383.580 kb on + strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.587 kb on - strand, within Shewana3_0349 at 383.605 kb on + strand, within Shewana3_0349 at 383.701 kb on - strand, within Shewana3_0349 at 383.741 kb on + strand, within Shewana3_0349 at 383.749 kb on - strand, within Shewana3_0349 at 383.788 kb on + strand, within Shewana3_0349 at 383.796 kb on - strand, within Shewana3_0349 at 383.799 kb on + strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.807 kb on - strand, within Shewana3_0349 at 383.844 kb on + strand, within Shewana3_0349
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 379,792 + Shewana3_0347 0.10 -0.5 379,800 - Shewana3_0347 0.11 +0.6 379,806 - Shewana3_0347 0.12 +0.8 379,848 + Shewana3_0347 0.17 -0.3 379,854 - Shewana3_0347 0.17 +0.6 379,856 - Shewana3_0347 0.18 +0.9 379,875 - Shewana3_0347 0.20 +0.9 379,935 - Shewana3_0347 0.26 +0.5 379,936 - Shewana3_0347 0.26 +0.5 379,974 + Shewana3_0347 0.31 +0.2 379,974 + Shewana3_0347 0.31 -0.8 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 +1.3 379,982 - Shewana3_0347 0.32 +0.3 379,982 - Shewana3_0347 0.32 +0.7 379,982 - Shewana3_0347 0.32 +0.2 379,982 - Shewana3_0347 0.32 +0.4 379,986 + Shewana3_0347 0.32 +0.1 379,993 + Shewana3_0347 0.33 +0.5 379,993 + Shewana3_0347 0.33 -0.5 379,994 - Shewana3_0347 0.33 +0.9 379,994 - Shewana3_0347 0.33 +0.2 380,135 + Shewana3_0347 0.49 -0.7 380,255 - Shewana3_0347 0.62 +0.1 380,271 + Shewana3_0347 0.64 +0.3 380,351 - Shewana3_0347 0.73 -0.4 380,419 - Shewana3_0347 0.80 +0.2 380,637 - -0.8 380,670 - -0.5 380,701 - -0.4 380,712 + -0.2 380,767 - -0.2 380,938 + -3.5 380,945 + -4.2 381,030 - Shewana3_0348 0.12 -1.3 381,083 - Shewana3_0348 0.15 -2.4 381,108 - Shewana3_0348 0.16 -2.2 381,210 - Shewana3_0348 0.21 -4.1 381,234 + Shewana3_0348 0.22 -1.5 381,646 + Shewana3_0348 0.42 -2.9 381,654 - Shewana3_0348 0.42 -3.0 381,654 - Shewana3_0348 0.42 -2.2 381,659 - Shewana3_0348 0.42 -3.0 381,793 - Shewana3_0348 0.49 -1.4 381,794 - Shewana3_0348 0.49 -1.5 381,888 + Shewana3_0348 0.53 -2.1 381,968 + Shewana3_0348 0.57 -1.6 381,976 - Shewana3_0348 0.57 -3.0 381,976 - Shewana3_0348 0.57 -1.8 382,106 + Shewana3_0348 0.64 -1.6 382,135 + Shewana3_0348 0.65 -2.3 382,143 - Shewana3_0348 0.65 -0.5 382,143 - Shewana3_0348 0.65 -2.0 382,156 + Shewana3_0348 0.66 -2.3 382,156 + Shewana3_0348 0.66 -2.3 382,171 + Shewana3_0348 0.67 -2.3 382,174 - Shewana3_0348 0.67 -2.3 382,305 + Shewana3_0348 0.73 -2.9 382,360 + Shewana3_0348 0.76 -1.8 382,360 + Shewana3_0348 0.76 -2.8 382,360 + Shewana3_0348 0.76 -2.2 382,368 - Shewana3_0348 0.76 -3.0 382,368 - Shewana3_0348 0.76 -1.6 382,547 - Shewana3_0348 0.85 -2.2 382,547 - Shewana3_0348 0.85 -1.0 382,547 - Shewana3_0348 0.85 -1.2 382,578 - Shewana3_0348 0.86 -1.6 382,579 - Shewana3_0348 0.86 -1.5 382,590 + Shewana3_0348 0.87 -4.9 382,590 + Shewana3_0348 0.87 -1.8 382,613 - Shewana3_0348 0.88 -2.2 382,613 - Shewana3_0348 0.88 -1.5 382,645 - Shewana3_0348 0.89 -2.2 382,678 - -1.4 382,722 + -2.7 382,727 + -3.2 382,735 - -3.5 382,735 - -1.4 382,751 + -0.6 382,751 + -1.7 382,868 + -1.5 382,893 + -0.1 382,901 + -2.2 382,901 + -2.9 382,901 - -0.6 382,901 - -0.4 382,903 - +0.3 382,903 - +0.3 382,903 - +0.8 382,916 + -1.3 382,919 - -0.8 382,921 + -0.5 382,940 + -0.9 382,940 + -0.9 382,947 - -0.4 382,947 - +0.9 382,949 + -0.2 382,995 - +0.0 382,998 + -1.4 383,115 + -2.3 383,115 + -1.3 383,196 + -0.8 383,196 + -1.0 383,196 + -1.8 383,204 - -0.9 383,204 - +1.6 383,204 - -2.3 383,220 + -0.3 383,239 + -0.1 383,239 + -0.4 383,242 - -2.4 383,242 - -0.7 383,242 - -2.1 383,242 - -0.4 383,242 - -1.8 383,263 + -1.7 383,263 + -1.2 383,271 - -0.5 383,271 - +0.1 383,284 + -0.6 383,335 + -1.6 383,383 + Shewana3_0349 0.13 -1.6 383,383 + Shewana3_0349 0.13 +0.7 383,391 - Shewana3_0349 0.13 +0.1 383,406 - Shewana3_0349 0.15 -3.3 383,580 + Shewana3_0349 0.31 -0.1 383,587 - Shewana3_0349 0.32 -0.4 383,587 - Shewana3_0349 0.32 -0.8 383,605 + Shewana3_0349 0.34 -0.1 383,701 - Shewana3_0349 0.43 -1.0 383,741 + Shewana3_0349 0.47 +0.0 383,749 - Shewana3_0349 0.47 -1.0 383,788 + Shewana3_0349 0.51 +0.8 383,796 - Shewana3_0349 0.52 -0.1 383,799 + Shewana3_0349 0.52 -0.2 383,807 - Shewana3_0349 0.53 -0.7 383,807 - Shewana3_0349 0.53 +0.4 383,844 + Shewana3_0349 0.57 -0.0
Or see this region's nucleotide sequence