Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0346 and Shewana3_0347 are separated by 384 nucleotides Shewana3_0347 and Shewana3_0348 are separated by 178 nucleotides
Shewana3_0346: Shewana3_0346 - hypothetical protein (RefSeq), at 378,580 to 379,314
_0346
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864
_0348
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 378.728 kb on - strand, within Shewana3_0346 at 378.774 kb on - strand, within Shewana3_0346 at 379.038 kb on + strand, within Shewana3_0346 at 379.046 kb on - strand, within Shewana3_0346 at 379.090 kb on + strand, within Shewana3_0346 at 379.169 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.332 kb on + strand at 379.340 kb on - strand at 379.418 kb on - strand at 379.467 kb on + strand at 379.583 kb on + strand at 379.619 kb on + strand at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347 at 380.351 kb on - strand, within Shewana3_0347 at 380.419 kb on - strand, within Shewana3_0347 at 380.637 kb on - strand at 380.670 kb on - strand at 380.701 kb on - strand at 380.712 kb on + strand at 380.767 kb on - strand at 380.938 kb on + strand at 380.945 kb on + strand at 381.030 kb on - strand, within Shewana3_0348 at 381.083 kb on - strand, within Shewana3_0348 at 381.108 kb on - strand, within Shewana3_0348 at 381.210 kb on - strand, within Shewana3_0348 at 381.234 kb on + strand, within Shewana3_0348
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 378,728 - Shewana3_0346 0.20 -0.8 378,774 - Shewana3_0346 0.26 -1.0 379,038 + Shewana3_0346 0.62 -1.4 379,046 - Shewana3_0346 0.63 -0.7 379,090 + Shewana3_0346 0.69 -0.2 379,169 - Shewana3_0346 0.80 -0.4 379,190 - Shewana3_0346 0.83 -0.1 379,190 - Shewana3_0346 0.83 -1.0 379,332 + +0.1 379,340 - -0.8 379,418 - +0.1 379,467 + -0.2 379,583 + +0.7 379,619 + +0.4 379,792 + Shewana3_0347 0.10 -0.5 379,800 - Shewana3_0347 0.11 +0.6 379,806 - Shewana3_0347 0.12 +0.8 379,848 + Shewana3_0347 0.17 -0.3 379,854 - Shewana3_0347 0.17 +0.6 379,856 - Shewana3_0347 0.18 +0.9 379,875 - Shewana3_0347 0.20 +0.9 379,935 - Shewana3_0347 0.26 +0.5 379,936 - Shewana3_0347 0.26 +0.5 379,974 + Shewana3_0347 0.31 +0.2 379,974 + Shewana3_0347 0.31 -0.8 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 +1.3 379,982 - Shewana3_0347 0.32 +0.3 379,982 - Shewana3_0347 0.32 +0.7 379,982 - Shewana3_0347 0.32 +0.2 379,982 - Shewana3_0347 0.32 +0.4 379,986 + Shewana3_0347 0.32 +0.1 379,993 + Shewana3_0347 0.33 +0.5 379,993 + Shewana3_0347 0.33 -0.5 379,994 - Shewana3_0347 0.33 +0.9 379,994 - Shewana3_0347 0.33 +0.2 380,135 + Shewana3_0347 0.49 -0.7 380,255 - Shewana3_0347 0.62 +0.1 380,271 + Shewana3_0347 0.64 +0.3 380,351 - Shewana3_0347 0.73 -0.4 380,419 - Shewana3_0347 0.80 +0.2 380,637 - -0.8 380,670 - -0.5 380,701 - -0.4 380,712 + -0.2 380,767 - -0.2 380,938 + -3.5 380,945 + -4.2 381,030 - Shewana3_0348 0.12 -1.3 381,083 - Shewana3_0348 0.15 -2.4 381,108 - Shewana3_0348 0.16 -2.2 381,210 - Shewana3_0348 0.21 -4.1 381,234 + Shewana3_0348 0.22 -1.5
Or see this region's nucleotide sequence