Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0335 and Shewana3_0336 overlap by 4 nucleotides Shewana3_0336 and Shewana3_0337 are separated by 8 nucleotides Shewana3_0337 and Shewana3_0338 overlap by 8 nucleotides
Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836
_0335
Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653
_0336
Shewana3_0337: Shewana3_0337 - thioester dehydrase family protein (RefSeq), at 373,662 to 374,036
_0337
Shewana3_0338: Shewana3_0338 - aconitate hydratase (RefSeq), at 374,029 to 375,393
_0338
Position (kb)
371
372
373
374 Strain fitness (log2 ratio)
-2
-1
0
1 at 370.869 kb on - strand, within Shewana3_0335 at 371.002 kb on + strand, within Shewana3_0335 at 371.015 kb on + strand, within Shewana3_0335 at 371.427 kb on + strand, within Shewana3_0335 at 371.447 kb on + strand, within Shewana3_0335 at 371.547 kb on - strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.761 kb on + strand at 371.846 kb on + strand at 371.849 kb on - strand at 371.946 kb on + strand at 372.009 kb on - strand at 372.282 kb on + strand, within Shewana3_0336 at 372.290 kb on - strand, within Shewana3_0336 at 372.314 kb on - strand, within Shewana3_0336 at 372.431 kb on + strand, within Shewana3_0336 at 372.441 kb on + strand, within Shewana3_0336 at 372.543 kb on - strand, within Shewana3_0336 at 372.939 kb on + strand, within Shewana3_0336 at 372.939 kb on + strand, within Shewana3_0336 at 372.947 kb on - strand, within Shewana3_0336 at 372.968 kb on + strand, within Shewana3_0336 at 373.128 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.245 kb on + strand, within Shewana3_0336 at 373.264 kb on - strand, within Shewana3_0336 at 373.422 kb on - strand, within Shewana3_0336 at 373.455 kb on - strand, within Shewana3_0336 at 373.470 kb on + strand, within Shewana3_0336 at 373.546 kb on + strand at 373.549 kb on - strand at 373.588 kb on - strand at 374.140 kb on - strand at 374.254 kb on - strand, within Shewana3_0338 at 374.302 kb on - strand, within Shewana3_0338 at 374.507 kb on - strand, within Shewana3_0338 at 374.508 kb on - strand, within Shewana3_0338 at 374.594 kb on + strand, within Shewana3_0338 at 374.602 kb on - strand, within Shewana3_0338 at 374.604 kb on + strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 370,869 - Shewana3_0335 0.38 -0.1 371,002 + Shewana3_0335 0.47 +0.3 371,015 + Shewana3_0335 0.48 +0.3 371,427 + Shewana3_0335 0.74 +0.6 371,447 + Shewana3_0335 0.75 +0.1 371,547 - Shewana3_0335 0.81 -0.2 371,607 + Shewana3_0335 0.85 +0.1 371,607 + Shewana3_0335 0.85 +0.1 371,761 + +0.1 371,846 + -1.1 371,849 - -0.1 371,946 + +0.0 372,009 - -0.1 372,282 + Shewana3_0336 0.25 -1.0 372,290 - Shewana3_0336 0.25 +0.3 372,314 - Shewana3_0336 0.26 -0.3 372,431 + Shewana3_0336 0.33 +0.4 372,441 + Shewana3_0336 0.33 -0.2 372,543 - Shewana3_0336 0.39 -0.7 372,939 + Shewana3_0336 0.61 +0.2 372,939 + Shewana3_0336 0.61 +0.1 372,947 - Shewana3_0336 0.61 -1.9 372,968 + Shewana3_0336 0.62 +0.1 373,128 - Shewana3_0336 0.71 +0.3 373,142 - Shewana3_0336 0.72 -0.1 373,142 - Shewana3_0336 0.72 +0.3 373,245 + Shewana3_0336 0.78 +1.2 373,264 - Shewana3_0336 0.79 +0.2 373,422 - Shewana3_0336 0.87 +0.2 373,455 - Shewana3_0336 0.89 +0.1 373,470 + Shewana3_0336 0.90 +0.0 373,546 + +0.1 373,549 - +0.7 373,588 - +0.0 374,140 - -0.8 374,254 - Shewana3_0338 0.16 -0.4 374,302 - Shewana3_0338 0.20 -0.7 374,507 - Shewana3_0338 0.35 -0.2 374,508 - Shewana3_0338 0.35 +0.1 374,594 + Shewana3_0338 0.41 +0.6 374,602 - Shewana3_0338 0.42 +0.0 374,604 + Shewana3_0338 0.42 +0.4 374,612 - Shewana3_0338 0.43 -0.5 374,612 - Shewana3_0338 0.43 -0.8
Or see this region's nucleotide sequence