Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0333 and Shewana3_0334 overlap by 4 nucleotides Shewana3_0334 and Shewana3_0335 overlap by 4 nucleotides Shewana3_0335 and Shewana3_0336 overlap by 4 nucleotides
Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843
_0333
Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274
_0334
Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836
_0335
Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653
_0336
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1 at 369.288 kb on - strand, within Shewana3_0333 at 369.381 kb on - strand, within Shewana3_0333 at 369.502 kb on - strand, within Shewana3_0333 at 369.561 kb on - strand, within Shewana3_0333 at 369.573 kb on + strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.752 kb on - strand, within Shewana3_0333 at 369.757 kb on + strand, within Shewana3_0333 at 369.765 kb on + strand at 369.765 kb on + strand at 369.951 kb on + strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.960 kb on - strand, within Shewana3_0334 at 370.195 kb on - strand, within Shewana3_0334 at 370.250 kb on + strand at 370.324 kb on + strand at 370.439 kb on + strand, within Shewana3_0335 at 370.479 kb on - strand, within Shewana3_0335 at 370.498 kb on + strand, within Shewana3_0335 at 370.530 kb on + strand, within Shewana3_0335 at 370.597 kb on - strand, within Shewana3_0335 at 370.601 kb on - strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.759 kb on + strand, within Shewana3_0335 at 370.869 kb on - strand, within Shewana3_0335 at 371.002 kb on + strand, within Shewana3_0335 at 371.015 kb on + strand, within Shewana3_0335 at 371.427 kb on + strand, within Shewana3_0335 at 371.447 kb on + strand, within Shewana3_0335 at 371.547 kb on - strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.761 kb on + strand at 371.846 kb on + strand at 371.849 kb on - strand at 371.946 kb on + strand at 372.009 kb on - strand at 372.282 kb on + strand, within Shewana3_0336 at 372.290 kb on - strand, within Shewana3_0336 at 372.314 kb on - strand, within Shewana3_0336 at 372.431 kb on + strand, within Shewana3_0336 at 372.441 kb on + strand, within Shewana3_0336 at 372.543 kb on - strand, within Shewana3_0336
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 369,288 - Shewana3_0333 0.34 -0.2 369,381 - Shewana3_0333 0.45 -0.3 369,502 - Shewana3_0333 0.59 -0.4 369,561 - Shewana3_0333 0.66 -0.8 369,573 + Shewana3_0333 0.68 +0.4 369,693 - Shewana3_0333 0.82 -0.0 369,693 - Shewana3_0333 0.82 -0.7 369,752 - Shewana3_0333 0.89 -0.3 369,757 + Shewana3_0333 0.90 -0.2 369,765 + -0.2 369,765 + -0.7 369,951 + Shewana3_0334 0.26 +0.6 369,954 - Shewana3_0334 0.26 -0.0 369,954 - Shewana3_0334 0.26 -0.2 369,960 - Shewana3_0334 0.28 -0.7 370,195 - Shewana3_0334 0.82 -2.3 370,250 + -0.5 370,324 + +0.1 370,439 + Shewana3_0335 0.11 +0.2 370,479 - Shewana3_0335 0.13 +0.2 370,498 + Shewana3_0335 0.14 -0.4 370,530 + Shewana3_0335 0.17 -0.4 370,597 - Shewana3_0335 0.21 -0.2 370,601 - Shewana3_0335 0.21 -0.1 370,612 + Shewana3_0335 0.22 -0.8 370,612 + Shewana3_0335 0.22 -0.1 370,612 + Shewana3_0335 0.22 -0.7 370,612 + Shewana3_0335 0.22 +0.8 370,759 + Shewana3_0335 0.31 -0.5 370,869 - Shewana3_0335 0.38 -0.1 371,002 + Shewana3_0335 0.47 +0.3 371,015 + Shewana3_0335 0.48 +0.3 371,427 + Shewana3_0335 0.74 +0.6 371,447 + Shewana3_0335 0.75 +0.1 371,547 - Shewana3_0335 0.81 -0.2 371,607 + Shewana3_0335 0.85 +0.1 371,607 + Shewana3_0335 0.85 +0.1 371,761 + +0.1 371,846 + -1.1 371,849 - -0.1 371,946 + +0.0 372,009 - -0.1 372,282 + Shewana3_0336 0.25 -1.0 372,290 - Shewana3_0336 0.25 +0.3 372,314 - Shewana3_0336 0.26 -0.3 372,431 + Shewana3_0336 0.33 +0.4 372,441 + Shewana3_0336 0.33 -0.2 372,543 - Shewana3_0336 0.39 -0.7
Or see this region's nucleotide sequence