Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0332 and Shewana3_0333 are separated by 9 nucleotides Shewana3_0333 and Shewana3_0334 overlap by 4 nucleotides Shewana3_0334 and Shewana3_0335 overlap by 4 nucleotides
Shewana3_0332: Shewana3_0332 - hypothetical protein (RefSeq), at 366,472 to 368,991
_0332
Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843
_0333
Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274
_0334
Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836
_0335
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1 at 368.139 kb on - strand, within Shewana3_0332 at 368.192 kb on + strand, within Shewana3_0332 at 368.192 kb on + strand, within Shewana3_0332 at 368.200 kb on - strand, within Shewana3_0332 at 368.361 kb on - strand, within Shewana3_0332 at 368.414 kb on + strand, within Shewana3_0332 at 368.433 kb on + strand, within Shewana3_0332 at 368.487 kb on - strand, within Shewana3_0332 at 368.570 kb on + strand, within Shewana3_0332 at 368.595 kb on + strand, within Shewana3_0332 at 368.684 kb on + strand, within Shewana3_0332 at 368.737 kb on - strand, within Shewana3_0332 at 368.817 kb on + strand at 368.893 kb on - strand at 369.085 kb on - strand at 369.140 kb on - strand, within Shewana3_0333 at 369.142 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.147 kb on + strand, within Shewana3_0333 at 369.150 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.155 kb on - strand, within Shewana3_0333 at 369.288 kb on - strand, within Shewana3_0333 at 369.381 kb on - strand, within Shewana3_0333 at 369.502 kb on - strand, within Shewana3_0333 at 369.561 kb on - strand, within Shewana3_0333 at 369.573 kb on + strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.752 kb on - strand, within Shewana3_0333 at 369.757 kb on + strand, within Shewana3_0333 at 369.765 kb on + strand at 369.765 kb on + strand at 369.951 kb on + strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.960 kb on - strand, within Shewana3_0334 at 370.195 kb on - strand, within Shewana3_0334 at 370.250 kb on + strand at 370.324 kb on + strand at 370.439 kb on + strand, within Shewana3_0335 at 370.479 kb on - strand, within Shewana3_0335 at 370.498 kb on + strand, within Shewana3_0335 at 370.530 kb on + strand, within Shewana3_0335 at 370.597 kb on - strand, within Shewana3_0335 at 370.601 kb on - strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.759 kb on + strand, within Shewana3_0335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 368,139 - Shewana3_0332 0.66 +0.2 368,192 + Shewana3_0332 0.68 +0.3 368,192 + Shewana3_0332 0.68 +0.2 368,200 - Shewana3_0332 0.69 +0.0 368,361 - Shewana3_0332 0.75 +0.4 368,414 + Shewana3_0332 0.77 +0.4 368,433 + Shewana3_0332 0.78 +0.5 368,487 - Shewana3_0332 0.80 -0.4 368,570 + Shewana3_0332 0.83 +0.8 368,595 + Shewana3_0332 0.84 +0.1 368,684 + Shewana3_0332 0.88 +0.5 368,737 - Shewana3_0332 0.90 -0.1 368,817 + +0.3 368,893 - +0.4 369,085 - -0.1 369,140 - Shewana3_0333 0.16 +0.3 369,142 + Shewana3_0333 0.17 +0.3 369,147 + Shewana3_0333 0.17 -0.2 369,147 + Shewana3_0333 0.17 -0.1 369,150 - Shewana3_0333 0.18 -0.6 369,155 - Shewana3_0333 0.18 -0.3 369,155 - Shewana3_0333 0.18 -0.2 369,155 - Shewana3_0333 0.18 -0.0 369,155 - Shewana3_0333 0.18 -0.0 369,288 - Shewana3_0333 0.34 -0.2 369,381 - Shewana3_0333 0.45 -0.3 369,502 - Shewana3_0333 0.59 -0.4 369,561 - Shewana3_0333 0.66 -0.8 369,573 + Shewana3_0333 0.68 +0.4 369,693 - Shewana3_0333 0.82 -0.0 369,693 - Shewana3_0333 0.82 -0.7 369,752 - Shewana3_0333 0.89 -0.3 369,757 + Shewana3_0333 0.90 -0.2 369,765 + -0.2 369,765 + -0.7 369,951 + Shewana3_0334 0.26 +0.6 369,954 - Shewana3_0334 0.26 -0.0 369,954 - Shewana3_0334 0.26 -0.2 369,960 - Shewana3_0334 0.28 -0.7 370,195 - Shewana3_0334 0.82 -2.3 370,250 + -0.5 370,324 + +0.1 370,439 + Shewana3_0335 0.11 +0.2 370,479 - Shewana3_0335 0.13 +0.2 370,498 + Shewana3_0335 0.14 -0.4 370,530 + Shewana3_0335 0.17 -0.4 370,597 - Shewana3_0335 0.21 -0.2 370,601 - Shewana3_0335 0.21 -0.1 370,612 + Shewana3_0335 0.22 -0.8 370,612 + Shewana3_0335 0.22 -0.1 370,612 + Shewana3_0335 0.22 -0.7 370,612 + Shewana3_0335 0.22 +0.8 370,759 + Shewana3_0335 0.31 -0.5
Or see this region's nucleotide sequence