Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0329 and Shewana3_0330 are separated by 96 nucleotides Shewana3_0330 and Shewana3_0331 are separated by 4 nucleotides
Shewana3_0329: Shewana3_0329 - 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq), at 363,111 to 364,328
_0329
Shewana3_0330: Shewana3_0330 - hypothetical protein (RefSeq), at 364,425 to 365,159
_0330
Shewana3_0331: Shewana3_0331 - monooxygenase, FAD-binding (RefSeq), at 365,164 to 366,471
_0331
Position (kb) 364
365
366 Strain fitness (log2 ratio) -1
0
1 at 363.457 kb on - strand, within Shewana3_0329 at 363.503 kb on + strand, within Shewana3_0329 at 363.567 kb on - strand, within Shewana3_0329 at 363.582 kb on - strand, within Shewana3_0329 at 363.700 kb on + strand, within Shewana3_0329 at 363.708 kb on - strand, within Shewana3_0329 at 363.828 kb on + strand, within Shewana3_0329 at 363.981 kb on + strand, within Shewana3_0329 at 364.015 kb on + strand, within Shewana3_0329 at 364.023 kb on + strand, within Shewana3_0329 at 364.023 kb on + strand, within Shewana3_0329 at 364.056 kb on - strand, within Shewana3_0329 at 364.056 kb on - strand, within Shewana3_0329 at 364.226 kb on - strand at 364.254 kb on + strand at 364.262 kb on - strand at 364.262 kb on - strand at 364.262 kb on - strand at 364.263 kb on - strand at 364.350 kb on + strand at 364.358 kb on - strand at 364.704 kb on - strand, within Shewana3_0330 at 364.773 kb on - strand, within Shewana3_0330 at 364.784 kb on + strand, within Shewana3_0330 at 364.789 kb on + strand, within Shewana3_0330 at 364.789 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.859 kb on + strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 364.867 kb on - strand, within Shewana3_0330 at 365.009 kb on + strand, within Shewana3_0330 at 365.017 kb on - strand, within Shewana3_0330 at 365.147 kb on + strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.155 kb on - strand at 365.162 kb on + strand at 365.410 kb on - strand, within Shewana3_0331 at 365.424 kb on + strand, within Shewana3_0331 at 365.439 kb on - strand, within Shewana3_0331 at 365.454 kb on - strand, within Shewana3_0331 at 365.611 kb on + strand, within Shewana3_0331 at 365.629 kb on + strand, within Shewana3_0331 at 365.645 kb on + strand, within Shewana3_0331 at 365.663 kb on - strand, within Shewana3_0331 at 365.799 kb on - strand, within Shewana3_0331 at 365.814 kb on + strand, within Shewana3_0331 at 365.878 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.017 kb on + strand, within Shewana3_0331 at 366.025 kb on - strand, within Shewana3_0331 at 366.150 kb on + strand, within Shewana3_0331
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 363,457 - Shewana3_0329 0.28 -0.6 363,503 + Shewana3_0329 0.32 +0.3 363,567 - Shewana3_0329 0.37 -0.3 363,582 - Shewana3_0329 0.39 +0.6 363,700 + Shewana3_0329 0.48 -0.0 363,708 - Shewana3_0329 0.49 -0.5 363,828 + Shewana3_0329 0.59 -0.3 363,981 + Shewana3_0329 0.71 +0.0 364,015 + Shewana3_0329 0.74 +0.5 364,023 + Shewana3_0329 0.75 -0.2 364,023 + Shewana3_0329 0.75 -0.5 364,056 - Shewana3_0329 0.78 -0.6 364,056 - Shewana3_0329 0.78 -0.9 364,226 - +0.4 364,254 + -0.6 364,262 - +0.1 364,262 - -0.1 364,262 - +0.2 364,263 - +0.2 364,350 + +0.2 364,358 - -0.5 364,704 - Shewana3_0330 0.38 -0.1 364,773 - Shewana3_0330 0.47 +0.1 364,784 + Shewana3_0330 0.49 +0.5 364,789 + Shewana3_0330 0.50 +0.0 364,789 + Shewana3_0330 0.50 +1.2 364,859 + Shewana3_0330 0.59 +0.1 364,859 + Shewana3_0330 0.59 +0.8 364,859 + Shewana3_0330 0.59 +0.3 364,867 - Shewana3_0330 0.60 +0.4 364,867 - Shewana3_0330 0.60 -0.0 364,867 - Shewana3_0330 0.60 +1.1 365,009 + Shewana3_0330 0.79 +0.1 365,017 - Shewana3_0330 0.81 -0.4 365,147 + -0.8 365,155 - +0.2 365,155 - +0.3 365,155 - +0.6 365,155 - -0.0 365,162 + -0.2 365,410 - Shewana3_0331 0.19 -0.4 365,424 + Shewana3_0331 0.20 +0.4 365,439 - Shewana3_0331 0.21 -0.3 365,454 - Shewana3_0331 0.22 +0.3 365,611 + Shewana3_0331 0.34 +0.6 365,629 + Shewana3_0331 0.36 -0.1 365,645 + Shewana3_0331 0.37 +0.7 365,663 - Shewana3_0331 0.38 +0.0 365,799 - Shewana3_0331 0.49 +0.0 365,814 + Shewana3_0331 0.50 +0.2 365,878 + Shewana3_0331 0.55 +1.1 366,017 + Shewana3_0331 0.65 -0.0 366,017 + Shewana3_0331 0.65 -0.6 366,025 - Shewana3_0331 0.66 -0.5 366,150 + Shewana3_0331 0.75 +0.2
Or see this region's nucleotide sequence