Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0320 and Shewana3_0321 are separated by 57 nucleotides Shewana3_0321 and Shewana3_0322 are separated by 349 nucleotides
Shewana3_0320: Shewana3_0320 - benzoate transporter (RefSeq), at 354,937 to 356,127
_0320
Shewana3_0321: Shewana3_0321 - GCN5-related N-acetyltransferase (RefSeq), at 356,185 to 356,640
_0321
Shewana3_0322: Shewana3_0322 - antibiotic acetyltransferase (RefSeq), at 356,990 to 357,637
_0322
Position (kb) 356
357 Strain fitness (log2 ratio) -2
-1
0
1 at 355.282 kb on - strand, within Shewana3_0320 at 355.357 kb on - strand, within Shewana3_0320 at 355.359 kb on + strand, within Shewana3_0320 at 355.401 kb on - strand, within Shewana3_0320 at 355.424 kb on + strand, within Shewana3_0320 at 355.428 kb on - strand, within Shewana3_0320 at 355.450 kb on - strand, within Shewana3_0320 at 355.536 kb on + strand, within Shewana3_0320 at 355.587 kb on + strand, within Shewana3_0320 at 355.602 kb on + strand, within Shewana3_0320 at 355.775 kb on - strand, within Shewana3_0320 at 355.843 kb on + strand, within Shewana3_0320 at 355.991 kb on - strand, within Shewana3_0320 at 356.150 kb on - strand at 356.173 kb on - strand at 356.183 kb on - strand at 356.183 kb on - strand at 356.282 kb on - strand, within Shewana3_0321 at 356.370 kb on + strand, within Shewana3_0321 at 356.482 kb on + strand, within Shewana3_0321 at 356.500 kb on - strand, within Shewana3_0321 at 356.503 kb on + strand, within Shewana3_0321 at 356.529 kb on + strand, within Shewana3_0321 at 356.613 kb on + strand at 356.737 kb on + strand at 356.765 kb on + strand at 356.831 kb on - strand at 356.877 kb on - strand at 356.903 kb on + strand at 356.924 kb on + strand at 357.123 kb on + strand, within Shewana3_0322 at 357.138 kb on - strand, within Shewana3_0322 at 357.192 kb on - strand, within Shewana3_0322 at 357.326 kb on + strand, within Shewana3_0322 at 357.331 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.339 kb on + strand, within Shewana3_0322 at 357.439 kb on + strand, within Shewana3_0322 at 357.447 kb on - strand, within Shewana3_0322 at 357.508 kb on + strand, within Shewana3_0322 at 357.565 kb on + strand, within Shewana3_0322 at 357.569 kb on - strand, within Shewana3_0322
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 355,282 - Shewana3_0320 0.29 +0.4 355,357 - Shewana3_0320 0.35 -1.7 355,359 + Shewana3_0320 0.35 +0.1 355,401 - Shewana3_0320 0.39 -0.7 355,424 + Shewana3_0320 0.41 -1.2 355,428 - Shewana3_0320 0.41 -0.1 355,450 - Shewana3_0320 0.43 -1.0 355,536 + Shewana3_0320 0.50 -0.1 355,587 + Shewana3_0320 0.55 +1.0 355,602 + Shewana3_0320 0.56 -1.5 355,775 - Shewana3_0320 0.70 -0.3 355,843 + Shewana3_0320 0.76 +0.6 355,991 - Shewana3_0320 0.88 -0.3 356,150 - +0.2 356,173 - +0.0 356,183 - -0.8 356,183 - -0.7 356,282 - Shewana3_0321 0.21 +0.2 356,370 + Shewana3_0321 0.41 +1.4 356,482 + Shewana3_0321 0.65 -0.6 356,500 - Shewana3_0321 0.69 +0.1 356,503 + Shewana3_0321 0.70 +0.1 356,529 + Shewana3_0321 0.75 +0.2 356,613 + -0.3 356,737 + -1.0 356,765 + -0.1 356,831 - +0.5 356,877 - -0.0 356,903 + -0.3 356,924 + +0.5 357,123 + Shewana3_0322 0.21 +0.4 357,138 - Shewana3_0322 0.23 -1.2 357,192 - Shewana3_0322 0.31 -2.0 357,326 + Shewana3_0322 0.52 -0.3 357,331 + Shewana3_0322 0.53 +0.1 357,339 + Shewana3_0322 0.54 +0.8 357,339 + Shewana3_0322 0.54 +0.2 357,439 + Shewana3_0322 0.69 +0.6 357,447 - Shewana3_0322 0.71 -1.8 357,508 + Shewana3_0322 0.80 -0.9 357,565 + Shewana3_0322 0.89 +0.6 357,569 - Shewana3_0322 0.89 -0.6
Or see this region's nucleotide sequence